Name: Lachnoanaerobaculum gingivalis JCM 33452
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164560

Type strain:

Species: Lachnoanaerobaculum gingivalis

Culture col. no.: JCM 33452, KCOM 2030

Strain history: J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC B114.

NCBI tax ID(s): 2490855 (species)

Section

Lachnoanaerobaculum gingivalis JCM 33452 is a mesophilic bacterium that was isolated from Subgingival dental plaque of a gingivitis lesion of a female in the Republic of Korea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Lachnoanaerobaculum*
	Species	"Lachnoanaerobaculum gingivalis"
	Full Scientific Name (LPSN)	Lachnoanaerobaculum gingivalis Lim et al. 2019

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Subgingival dental plaque of a gingivitis lesion of a female (43 years old) in the Republic of Korea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lachnoanaerobaculum gingivalis 16S ribosomal RNA gene, partial sequence	MK751703	1454	ENA	2490855 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lachnoanaerobaculum gingivalis KCOM 2030	GCA_003862475	contig	GenBank	2490855 tax ID

[Ref.: #67770]

GC-content

35.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnoanaerobaculum gingivalis KCOM 2030 NCBI: GCA_003862475.1
[Ref.: #69480]	flagellated	no	93.986	no
[Ref.: #69480]	gram-positive	yes	87.441	no
[Ref.: #69480]	anaerobic	yes	99.087	no
[Ref.: #69480]	aerobic	no	98.554	no
[Ref.: #69480]	halophile	no	82.813	no
[Ref.: #69480]	spore-forming	no	50	no
[Ref.: #69480]	thermophile	no	98.441	yes
[Ref.: #69480]	glucose-util	yes	88.415	no
[Ref.: #69480]	motile	no	90.892	no
[Ref.: #69480]	glucose-ferment	yes	72.813	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33452, KCOM 2030

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lachnoanaerobaculum gingivalis sp. nov., Isolated from Human Subgingival Dental Plaque of a Gingivitis Lesion.	Lim YK, Park SN, Jo E, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01747-z	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Lachnoanaerobaculum gingivalis KCOM 2030

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