Name: Bifidobacterium callimiconis 2028B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164528

Type strain:

Species: Bifidobacterium callimiconis

Strain Designation: 2028B

Culture col. no.: JCM 33352, CCUG 72814, LMG 30938

Strain history: LMG 30938 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; 2028B.

NCBI tax ID(s): 2306973 (species)

SI-ID 409471

CCUG 72814

Section

Bifidobacterium callimiconis 2028B is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Stool sample of a Goeldi's marmoset .

colony-forming
Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium callimiconis**
	Full Scientific Name (LPSN)	Bifidobacterium callimiconis Duranti et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67861]	Gram stain	positive

[Ref.: #67861]	Motility	no

[Ref.: #67861]	Colony size	1-2.5 mm
[Ref.: #67861]	Colony color	white
[Ref.: #67861]	Colony shape	circular
[Ref.: #67861]	Cultivation medium used	MRS agar

[Ref.: #67861]	Colony shape	oval

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #67770]		growth	37 °C
[Ref.: #67861]	no	growth	45 °C
[Ref.: #67861]	no	growth	20 °C
[Ref.: #67861]		growth	25-40 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67861]	Temperature range	thermophilic
[Ref.: #67861]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #67861]			growth	4-6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67861]

Oxygen tolerance

facultative anaerobe

[Ref.: #67861]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67861]	cellobiose ChEBI	+	fermentation
[Ref.: #67861]	D-arabinose ChEBI	+	fermentation
[Ref.: #67861]	D-fructose ChEBI	+	fermentation
[Ref.: #67861]	D-galactose ChEBI	+	fermentation
[Ref.: #67861]	D-glucose ChEBI	+	fermentation
[Ref.: #67861]	D-mannitol ChEBI	+	fermentation
[Ref.: #67861]	D-mannose ChEBI	+	fermentation
[Ref.: #67861]	D-ribose ChEBI	+	fermentation
[Ref.: #67861]	D-sorbitol ChEBI	+	fermentation
[Ref.: #67861]	D-xylose ChEBI	+	fermentation
[Ref.: #67861]	gelatin ChEBI	-	hydrolysis
[Ref.: #67861]	inulin ChEBI	+	fermentation
[Ref.: #67861]	L-fucose ChEBI	-	fermentation
[Ref.: #67861]	L-rhamnose ChEBI	+	fermentation
[Ref.: #67861]	maltodextrin ChEBI	+	fermentation
[Ref.: #67861]	melibiose ChEBI	+	fermentation
[Ref.: #67861]	N-acetylgalactosamine ChEBI	-	fermentation
[Ref.: #67861]	N-acetylglucosamine ChEBI	+	fermentation
[Ref.: #67861]	nitrate ChEBI	-	reduction
[Ref.: #67861]	pullulan ChEBI	+	fermentation
[Ref.: #67861]	raffinose ChEBI	+	fermentation
[Ref.: #67861]	starch ChEBI	+	fermentation
[Ref.: #67861]	sucrose ChEBI	+	fermentation
[Ref.: #67861]	trehalose ChEBI	+	fermentation
[Ref.: #67861]	turanose ChEBI	+	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67861]	acetoin ChEBI	no
[Ref.: #67861]	hydrogen sulfide ChEBI	no
[Ref.: #67861]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #67861]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #67861]	arginine dihydrolase	+	3.5.3.6
[Ref.: #67861]	catalase	-	1.11.1.6
[Ref.: #67861]	fructose-6-phosphate phosphoketolase	+	4.1.2.22
[Ref.: #67861]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Stool sample of a Goeldi's marmoset (Callimico goeldii)
[Ref.: #67770]	Host species	Callimico goeldii

[Ref.: #67861]	Sample type/isolated from	stool sample of a Goeldi's marmoset (Callimico goeldii)
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67861]	Bifidobacterium sp. strain LMG 30938 16S ribosomal RNA gene, partial sequence	MK377257	1514	ENA	2306973 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium callimiconis 2028B	GCA_003952005	contig	GenBank	2306973 tax ID
[Ref.: #66792]	Bifidobacterium callimiconis 2028B	2867271487	draft	JGI IMG/M	2306973 tax ID	*

[Ref.: #67861]

GC-content

62.37 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33352, CCUG 72814, LMG 30938

[Ref.: #114173]

SI-ID 409471

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67861

Sabrina Duranti, Gabriele Andrea Lugli, Stefania Napoli, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Giulia Alessandri, Francesca Turroni, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura: Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.. IJSEM 69: 1288 - 1298 2019 ( DOI 10.1099/ijsem.0.003306 )

#114173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID409471.1 )

* These data were automatically processed and therefore are not curated

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