Name: Pontibacter mangrovi JCM 33333
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164520

Type strain:

Species: Pontibacter mangrovi

Culture col. no.: JCM 33333, CGMCC 1.16729

Strain history: K. Mo; Chin. Acad. of Trop. Agric. Sci., China; HB172049.

Section

Pontibacter mangrovi JCM 33333 is a mesophilic bacterium that was isolated from Mangrove sediment from Bamen Bay mangrove forest.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter mangrovi**
	Full Scientific Name (LPSN)	Pontibacter mangrovi Mo et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Mangrove sediment from Bamen Bay mangrove forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pontibacter sp. strain HB172049 16S ribosomal RNA gene, partial sequence	MK253263	1445	ENA	1895908 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pontibacter mangrovi HB172049	GCA_006385705	contig	GenBank	2589816 tax ID

[Ref.: #67770]

GC-content

52.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pontibacter mangrovi HB172049 NCBI: GCA_006385705.1
[Ref.: #69480]	motile	no	92.523	no
[Ref.: #69480]	flagellated	no	96.186	no
[Ref.: #69480]	gram-positive	no	98.034	no
[Ref.: #69480]	anaerobic	no	98.617	no
[Ref.: #69480]	aerobic	yes	83.75	no
[Ref.: #69480]	halophile	no	80.833	no
[Ref.: #69480]	spore-forming	no	94.138	no
[Ref.: #69480]	thermophile	no	97.892	no
[Ref.: #69480]	glucose-util	yes	87.069	no
[Ref.: #69480]	glucose-ferment	no	84.927	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33333, CGMCC 1.16729

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter mangrovi sp. nov., isolated from mangrove sediment.	Mo KL, Wang L, Wu QJ, Ye L, Liu XD, Hu YH, Huang HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004280	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Pontibacter mangrovi HB172049

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