Piscinibacter terrae (KACC 19792, JCM 32971, S-16)

Name: Piscinibacter terrae (KACC 19792, JCM 32971, S-16)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164428

Type strain

Strain Designation S-16

Culture col. no. KACC 19792 JCM 32971 S-16

NCBI tax ID(s) 2496871

Special Collections JCM Literature strains

History C. O. Jeon; Chung-Ang Univ., South Korea; S-16.

Links

Piscinibacter terrae S-16 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from Soil from Chung-Ang University in South Korea.

Gram-negative rod-shaped colony-forming facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 394576

JCM 32971

@ref 20215

Last LPSN update 2026-02-09 11:39:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Sphaerotilaceae

Genus Piscinibacter

Species Piscinibacter terrae

Full scientific name Piscinibacter terrae Lu and Chen 2024

Synonyms (2)

"Geomonas soli"
"Albitalea terrae"

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
68057	negative	rod-shaped
125439	negative			94

Colony morphology

@ref	Colony color	Colony shape
68057	white	circular

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic
68057	positive	growth	20-40
68057	positive	optimum	25-30	mesophilic

Culture pH

@ref	Ability	Type	PH
68057	positive	optimum	6.5
68057	positive	growth	5.5-7.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68057	facultative anaerobe
125439	obligate aerobe	98.1

Spore formation

@ref	Spore formation	Confidence
125439		94.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68057	NaCl	positive	growth	0 %(w/v)

Observation

@ref	Observation
67770	quinones: Q-8
68057	The major respiratory quinone is Q-8
68057	Major polar lipids are phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68057	17128 ChEBI	adipate	-	assimilation
68057		casein	+	hydrolysis
68057	17634 ChEBI	D-glucose	-	assimilation
68057	16899 ChEBI	D-mannitol	-	assimilation
68057	16024 ChEBI	D-mannose	-	assimilation
68057	4853 ChEBI	esculin	+	hydrolysis
68057	17234 ChEBI	glucose	-	fermentation
68057	17120 ChEBI	hexanoate	-	assimilation
68057	30849 ChEBI	L-arabinose	-	assimilation
68057	25115 ChEBI	malate	-	assimilation
68057	17306 ChEBI	maltose	-	assimilation
68057	59640 ChEBI	N-acetylglucosamine	-	assimilation
68057	18401 ChEBI	phenylacetate	-	assimilation
68057	32032 ChEBI	potassium gluconate	-	assimilation
68057	53258 ChEBI	sodium citrate	-	assimilation
68057	28017 ChEBI	starch	+	hydrolysis
68057	53424 ChEBI	tween 20	+	hydrolysis
68057	53426 ChEBI	tween 80	+	hydrolysis
68057	18186 ChEBI	tyrosine	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68057	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68057	acid phosphatase	+	3.1.3.2
68057	alkaline phosphatase	+	3.1.3.1
68057	alpha-chymotrypsin	+	3.4.21.1
68057	alpha-fucosidase	-	3.2.1.51
68057	alpha-galactosidase	-	3.2.1.22
68057	alpha-glucosidase	+	3.2.1.20
68057	alpha-mannosidase	+	3.2.1.24
68057	arginine dihydrolase	-	3.5.3.6
68057	beta-galactosidase	-	3.2.1.23
68057	beta-glucosidase	-	3.2.1.21
68057	beta-glucuronidase	-	3.2.1.31
68057	cystine arylamidase	+	3.4.11.3
68057	esterase (C 4)	+
68057	esterase Lipase (C 8)	+
68057	gelatinase	+
68057	leucine arylamidase	+	3.4.11.1
68057	lipase (C 14)	-
68057	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68057	naphthol-AS-BI-phosphohydrolase	+
68057	trypsin	-	3.4.21.4
68057	urease	+	3.5.1.5
68057	valine arylamidase	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67770	Soil from Chung-Ang University in South Korea
68057	soil	Chung-Ang University	Republic of Korea	KOR	Asia	37.5042	126.957 37.5042/126.957

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68057	ASM385289v1 assembly for Piscinibacter terrae S-16	contig	GCA_003852895	2496871.3	2881451160	2496871	70.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68057	Albitalea terrae 16S ribosomal RNA gene, partial sequence	MH725568	1451		2496871

GC content

@ref	GC-content (mol%)	Method
68057	66.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Albitalea terrae S-16
NCBI: GCA_003852895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.10	no
125439	motility	BacteriaNetⓘ	yes	78.70	no
125439	gram_stain	BacteriaNetⓘ	negative	94.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil.	Khan SA, Jeong SE, Park HY, Lee SS, Jeon CO	Curr Microbiol	10.1007/s00284-019-01814-5	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68057	Shehzad Abid Khan, Sang Eun Jeong, Hye Yoon Park, Sang-Suk Lee, Che Ok Jeon: Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil. Arch Microbiol 77: 286 - 293 2020 ( DOI 10.1007/s00284-019-01814-5 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Piscinibacter terrae (KACC 19792, JCM 32971, S-16)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003852895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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