Name: Geomonas soli S-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164428

Type strain:

Species: Geomonas soli

Strain Designation: S-16

Culture col. no.: JCM 32971, KACC 19792

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S-16.

Section

Geomonas soli S-16 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from Soil from Chung-Ang University in South Korea.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	"Geomonas"
	Species	"Geomonas soli"
	Full Scientific Name (LPSN)	Geomonas soli Khan et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68057]	Gram stain	negative

[Ref.: #68057]	Cell shape	rod-shaped

[Ref.: #68057]	Motility	no

[Ref.: #68057]	Colony color	white
[Ref.: #68057]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #68057]	growth	20-40 °C
[Ref.: #68057]	optimum	25-30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68057]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68057]			optimum	6.5
[Ref.: #68057]			growth	5.5-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68057]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68057]		NaCl		growth	0	%(w/v)

[Ref.: #67770]	Observation	quinones: Q-8
[Ref.: #68057]	Observation	The major respiratory quinone is Q-8
[Ref.: #68057]	Observation	Major polar lipids are phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68057]	adipate ChEBI	-	assimilation
[Ref.: #68057]	casein	+	hydrolysis
[Ref.: #68057]	D-glucose ChEBI	-	assimilation
[Ref.: #68057]	D-mannitol ChEBI	-	assimilation
[Ref.: #68057]	D-mannose ChEBI	-	assimilation
[Ref.: #68057]	esculin ChEBI	+	hydrolysis
[Ref.: #68057]	glucose ChEBI	-	fermentation
[Ref.: #68057]	hexanoate ChEBI	-	assimilation
[Ref.: #68057]	L-arabinose ChEBI	-	assimilation
[Ref.: #68057]	malate ChEBI	-	assimilation
[Ref.: #68057]	maltose ChEBI	-	assimilation
[Ref.: #68057]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68057]	phenylacetate ChEBI	-	assimilation
[Ref.: #68057]	potassium gluconate ChEBI	-	assimilation
[Ref.: #68057]	sodium citrate ChEBI	-	assimilation
[Ref.: #68057]	starch ChEBI	+	hydrolysis
[Ref.: #68057]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68057]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68057]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68057]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68057]	acid phosphatase	+	3.1.3.2
[Ref.: #68057]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68057]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68057]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68057]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68057]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68057]	alpha-mannosidase	+	3.2.1.24
[Ref.: #68057]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68057]	beta-galactosidase	-	3.2.1.23
[Ref.: #68057]	beta-glucosidase	-	3.2.1.21
[Ref.: #68057]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68057]	cystine arylamidase	+	3.4.11.3
[Ref.: #68057]	esterase (C 4)	+
[Ref.: #68057]	esterase Lipase (C 8)	+
[Ref.: #68057]	gelatinase	+
[Ref.: #68057]	leucine arylamidase	+	3.4.11.1
[Ref.: #68057]	lipase (C 14)	-
[Ref.: #68057]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68057]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68057]	trypsin	-	3.4.21.4
[Ref.: #68057]	urease	+	3.5.1.5
[Ref.: #68057]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Chung-Ang University in South Korea

[Ref.: #68057]	Sample type/isolated from	soil
[Ref.: #68057]	Geographic location (country and/or sea, region)	Chung-Ang University
[Ref.: #68057]	Country	Republic of Korea
[Ref.: #68057]	Country ISO 3 Code	KOR
[Ref.: #68057]	Continent	Asia
[Ref.: #68057]	Geographic location	37.5042°/126.9570°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68057]	Geomonas soli 16S ribosomal RNA gene, partial sequence	MH725568	1451	ENA	2496871 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68057]	Albitalea terrae S-16	GCA_003852895	contig	GenBank	2496871 tax ID
[Ref.: #66792]	Geomonas soli S-16	2881451160	draft	JGI IMG/M	2496871 tax ID	*

[Ref.: #68057]

GC-content

66.8 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32971, KACC 19792

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil.	Khan SA, Jeong SE, Park HY, Lee SS, Jeon CO	Curr Microbiol	10.1007/s00284-019-01814-5	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68057

Shehzad Abid Khan, Sang Eun Jeong, Hye Yoon Park, Sang-Suk Lee, Che Ok Jeon: Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil. Arch Microbiol 77: 286 - 293 2020 ( DOI 10.1007/s00284-019-01814-5 )

* These data were automatically processed and therefore are not curated

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