Alistipes onderdonkii subsp. vulgaris (JCM 32845)

Name: Alistipes onderdonkii subsp. vulgaris (JCM 32845)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164385

Type strain

Culture col. no. JCM 32845

NCBI tax ID(s) 2585117

Special Collections JCM

Links

Alistipes onderdonkii subsp. vulgaris JCM 32845 is a mesophilic prokaryote that was isolated from Feces of a woman in the forties.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132929

JCM 32845

@ref 20215

Last LPSN update 2025-12-16 10:09:27

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus Alistipes

Species Alistipes onderdonkii subsp. vulgaris

Full scientific name Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020

BacDive ID	Other strains from **Alistipes onderdonkii subsp. vulgaris** (9)	Type strain
159606	A. onderdonkii subsp. vulgaris 3BBH6, DSM 108977, JCM 32839 (type strain)
164380	A. onderdonkii subsp. vulgaris JCM 32840
164381	A. onderdonkii subsp. vulgaris JCM 32841
164382	A. onderdonkii subsp. vulgaris JCM 32842
164383	A. onderdonkii subsp. vulgaris JCM 32843
164384	A. onderdonkii subsp. vulgaris JCM 32844
164386	A. onderdonkii subsp. vulgaris JCM 32846
164387	A. onderdonkii subsp. vulgaris JCM 32847
164388	A. onderdonkii subsp. vulgaris JCM 32849

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.34
125439	negative	100

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125438		93.976
125439		99.9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Feces of a woman in the forties	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC468795 (>99% sequence identity) for Alistipes onderdonkii subclade from Microbeatlas

Aquatic Samples	5936
Soil Samples	1356
Animal Samples	169152
Plant Samples	565
Total Samples	177009

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Aond_2.0 assembly for Alistipes onderdonkii subsp. vulgaris 5CPYCFAH4	complete	GCA_006542705	2585754.3	2884619277	2585117	98.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alistipes onderdonkii subsp. vulgaris 5CPYCFAH4 gene for 16S ribosomal RNA, partial sequence	LC468795	1461		2585117

GC content

@ref	GC-content (mol%)	Method
67770	58	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alistipes sp. 5CPYCFAH4
PATRIC: 2585754.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	yes	63.50	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alistipes sp. 5CPYCFAH4
PATRIC: 2585754.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.34	no
125438	anaerobic	anaerobicⓘ	yes	81.71	no
125438	spore-forming	spore-formingⓘ	no	93.98	no
125438	aerobic	aerobicⓘ	no	88.06	no
125438	thermophilic	thermophileⓘ	no	98.24	yes
125438	flagellated	motile2+ⓘ	no	88.57	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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