Name: Pseudonocardia cytotoxica JCM 32718
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164340

Type strain:

Species: Pseudonocardia cytotoxica

Culture col. no.: JCM 32718, CCUG 72333

Strain history: T. P. Sajeevan; Cochin Univ. of Sci. & Technol., India; MCCB 268.

NCBI tax ID(s): 1716172 (species)

Section

Pseudonocardia cytotoxica JCM 32718 is a mesophilic bacterium that was isolated from Sediment from a high Arctic fjord Kongsfjorden.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	"Pseudonocardia cytotoxica"
	Full Scientific Name (LPSN)	Pseudonocardia cytotoxica Dhaneesha et al. 2021

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment from a high Arctic fjord Kongsfjorden
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ny Ålesund, Svalbard
[Ref.: #67770]	Country	Norway
[Ref.: #67770]	Country ISO 3 Code	NOR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudonocardia sp. MCCB 268 16S ribosomal RNA gene, partial sequence	KR057433	1484	ENA	1716172 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudonocardia cytotoxica MCCB 268	GCA_011684045	contig	GenBank	1716172 tax ID

[Ref.: #67770]

GC-content

70.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudonocardia cytotoxica MCCB 268 NCBI: GCA_011684045.1
[Ref.: #69480]	motile	no	87.088	no
[Ref.: #69480]	flagellated	no	92.129	no
[Ref.: #69480]	gram-positive	no	78.742	no
[Ref.: #69480]	anaerobic	no	92.31	no
[Ref.: #69480]	aerobic	yes	50.658	no
[Ref.: #69480]	halophile	no	75.061	no
[Ref.: #69480]	spore-forming	no	96.87	no
[Ref.: #69480]	glucose-util	yes	85.666	no
[Ref.: #69480]	thermophile	no	97.096	no
[Ref.: #69480]	glucose-ferment	yes	59.159	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32718, CCUG 72333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia cytotoxica sp. nov., a novel actinomycete isolated from an Arctic fjord with potential to produce cytotoxic compound.	Dhaneesha M, Umar M, Merlin TS, Krishnan KP, Sukumaran V, Sinha RK, Anas A, Fu P, MacMillan JB, Sajeevan TP	Antonie Van Leeuwenhoek	10.1007/s10482-020-01490-7	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Pseudonocardia cytotoxica MCCB 268

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