Cite this strain

"Pseudonocardia cytotoxica" (CCUG 72333, JCM 32718)

BacDive ID 164340

Type strain

Culture col. no. CCUG 72333 JCM 32718

NCBI tax ID(s) 1716172

Special Collections CCUG JCM

History JCM <-- T. P. Sajeevan; Cochin Univ. of Sci. & Technol., India; MCCB 268.

Links

"Pseudonocardia cytotoxica" JCM 32718 is a bacterium that was isolated from Sediment from a high Arctic fjord Kongsfjorden.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 391074

JCM 32718

@ref 20215

Last LPSN update 2026-05-29 08:45:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species "Pseudonocardia cytotoxica"

Full scientific name Pseudonocardia cytotoxica Dhaneesha et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	97.072

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.657

Spore formation

@ref	Spore formation	Confidence
125438		97.994

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sediment from a high Arctic fjord Kongsfjorden	Ny Ålesund, Svalbard	Norway	NOR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1168404v1 assembly for Pseudonocardia cytotoxica MCCB 268	contig	GCA_011684045	1716172.3	2897726163	1716172	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudonocardia sp. MCCB 268 16S ribosomal RNA gene, partial sequence	KR057433	1484		1716172

GC content

@ref	GC-content (mol%)	Method
67770	70.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1168404v1 assembly for Pseudonocardia cytotoxica MCCB 268
NCBI: GCA_011684045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.66	no
125439	motility	BacteriaNetⓘ	no	87.96	no
125439	gram_stain	BacteriaNetⓘ	positive	97.07	no
125439	spore_formation	BacteriaNetⓘ	no	66.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudonocardia cytotoxica MCCB 268
NCBI: GCA_011684045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	57.98	no
125438	anaerobic	anaerobicⓘ	no	74.35	no
125438	aerobic	aerobicⓘ	no	65.48	no
125438	spore-forming	spore-formingⓘ	no	97.99	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	81.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia cytotoxica sp. nov., a novel actinomycete isolated from an Arctic fjord with potential to produce cytotoxic compound.	Dhaneesha M, Umar M, Merlin TS, Krishnan KP, Sukumaran V, Sinha RK, Anas A, Fu P, MacMillan JB, Sajeevan TP	Antonie Van Leeuwenhoek	10.1007/s10482-020-01490-7	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Pseudonocardia cytotoxica" (CCUG 72333, JCM 32718)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011684045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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