Name: Cupriavidus lacunae JCM 32674
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164321

Type strain:

Species: Cupriavidus lacunae

Culture col. no.: JCM 32674, KACC 19624

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S23.

NCBI tax ID(s): 2666307 (species)

Section

Cupriavidus lacunae JCM 32674 is a mesophilic bacterium that was isolated from Pond-side soil of an artificial pond in Seoul.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Cupriavidus*
	Species	**Cupriavidus lacunae**
	Full Scientific Name (LPSN)	Cupriavidus lacunae Feng et al. 2019

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Pond-side soil of an artificial pond in Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MG745916 (>99% sequence identity) for Cupriavidus from Microbeatlas

Aquatic Samples	5686
Soil Samples	15055
Animal Samples	7044
Plant Samples	2775
Total Samples	30560

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cupriavidus lacunae 16S ribosomal RNA gene, partial sequence	MG745916	1468	ENA	2666307 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cupriavidus lacunae S23	GCA_003353055	contig	GenBank	2666307 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cupriavidus lacunae S23 NCBI: GCA_003353055.1
[Ref.: #69480]	motile	yes	86.902	no
[Ref.: #69480]	flagellated	no	55.201	no
[Ref.: #69480]	gram-positive	no	98.246	no
[Ref.: #69480]	anaerobic	no	99.154	no
[Ref.: #69480]	aerobic	yes	93.565	no
[Ref.: #69480]	halophile	no	93.638	no
[Ref.: #69480]	spore-forming	no	93.891	no
[Ref.: #69480]	glucose-util	no	60.517	no
[Ref.: #69480]	thermophile	no	98.927	yes
[Ref.: #69480]	glucose-ferment	no	89.368	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32674, KACC 19624

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cupriavidus lacunae sp. nov., isolated from pond-side soil.	Feng T, Kim KH, Oh J, Jeon CO	Antonie Van Leeuwenhoek	10.1007/s10482-018-1187-5	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Cupriavidus lacunae S23

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