Name: Spirosoma agri JCM 32199
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164220

Type strain:

Species: Spirosoma agri

Culture col. no.: JCM 32199, KCTC 52727

Strain history: H.-Y. Jung; Kyungpook Natl. Univ., South Korea; S7-3-3.

NCBI tax ID(s): 1987381 (species)

Section

Spirosoma agri JCM 32199 is a mesophilic, Gram-negative bacterium that was isolated from Apple orchard soil in Gyeongsangnam-do Province.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma agri**
	Full Scientific Name (LPSN)	Spirosoma agri Li et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69480]	Motility	no Confidence in %93.382

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Apple orchard soil in Gyeongsangnam-do Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spirosoma agri gene for 16S ribosomal RNA, partial sequence	LC269320	1420	ENA	1987381 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spirosoma agri KCTC 52727	GCA_010747415	contig	GenBank	1987381 tax ID	*
[Ref.: #66792]	Spirosoma agri strain KCTC 52727	1987381.4	wgs	PATRIC	1987381 tax ID	*
[Ref.: #66792]	Spirosoma agri KCTC 52727	2894682665	draft	JGI IMG/M	1987381 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spirosoma agri strain KCTC 52727 PATRIC: 1987381.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spirosoma agri strain KCTC 52727 PATRIC: 1987381.4
[Ref.: #69480]	motile	no	91.896	no
[Ref.: #69480]	gram-positive	no	95.88	no
[Ref.: #69480]	anaerobic	no	99.291	no
[Ref.: #69480]	aerobic	yes	90.485	no
[Ref.: #69480]	halophile	no	94.2	no
[Ref.: #69480]	spore-forming	no	93.144	no
[Ref.: #69480]	glucose-util	yes	78.453	no
[Ref.: #69480]	flagellated	no	97.415	no
[Ref.: #69480]	thermophile	no	99.392	no
[Ref.: #69480]	glucose-ferment	no	83.889	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32199, KCTC 52727

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma agri sp. nov., Isolated from Apple Orchard Soil.	Li W, Lee SY, Kang IK, Ten LN, Jung HY	Curr Microbiol	10.1007/s00284-018-1434-z	2018	*
Phylogeny	Spirosoma endbachense sp. nov., isolated from a natural salt meadow.	Rojas J, Ambika Manirajan B, Ratering S, Suarez C, Geissler-Plaum R, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004601	2020	*
Genetics	Draft Genome Sequences of Spirosoma agri KCTC 52727 and Spirosoma terrae KCTC 52035.	Rojas J, Ambika Manirajan B, Ratering S, Suarez C, Schnell S	Microbiol Resour Announc	10.1128/MRA.00317-20	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Spirosoma agri in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Spirosoma agri strain KCTC 52727

Spirosoma agri strain KCTC 52727

Change proposal

Change proposal