Name: Oceaniradius stylonematis StC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164179

Type strain:

Species: Oceaniradius stylonematis

Strain Designation: StC1

Culture col. no.: JCM 32050, KACC 19231

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; StC1.

NCBI tax ID(s): 2184161 (species)

Section

Oceaniradius stylonematis StC1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Marine red alga, Stylonema cornu-cervi.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Oceaniradius*
	Species	**Oceaniradius stylonematis**
	Full Scientific Name (LPSN)	Oceaniradius stylonematis Jeong et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67953]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #67953]	Cell length	2.6-3.5 µm

[Ref.: #67953]	Cell width	0.5-1.0 µm

[Ref.: #67953]	Cell shape	rod-shaped

[Ref.: #67953]	Motility	yes

[Ref.: #67953]

Colony color

pink

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	25 °C
[Ref.: #67953]	growth	30-45 °C
[Ref.: #67953]	optimum	37 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67953]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67953]			optimum	7
[Ref.: #67953]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67953]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67953]		NaCl		growth	1.0-8.0	%(w/v)
[Ref.: #67953]		NaCl		optimum	2	%(w/v)

[Ref.: #67770]	Observation	quinones: Q-10
[Ref.: #67953]	Observation	nitrogen gas production
[Ref.: #67953]	Observation	The predominant quinone is Q-10
[Ref.: #67953]	Observation	The major polar lipids are sulfoquinovosyl diacylglycerol, phosphatidylethanolamine and phosphatidylglycerol

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67953]	adipate ChEBI	+	assimilation
[Ref.: #67953]	casein	-	hydrolysis
[Ref.: #67953]	D-glucose ChEBI	+	assimilation
[Ref.: #67953]	D-mannitol ChEBI	+	assimilation
[Ref.: #67953]	D-mannose ChEBI	+	assimilation
[Ref.: #67953]	decanoate ChEBI	-	assimilation
[Ref.: #67953]	esculin ChEBI	+	hydrolysis
[Ref.: #67953]	gelatin ChEBI	-	hydrolysis
[Ref.: #67953]	L-arabinose ChEBI	+	assimilation
[Ref.: #67953]	malate ChEBI	+	assimilation
[Ref.: #67953]	maltose ChEBI	+	assimilation
[Ref.: #67953]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #67953]	nitrate ChEBI	+	reduction
[Ref.: #67953]	phenylacetate ChEBI	+	assimilation
[Ref.: #67953]	potassium gluconate ChEBI	+	assimilation
[Ref.: #67953]	sodium citrate ChEBI	+	assimilation
[Ref.: #67953]	starch ChEBI	-	hydrolysis
[Ref.: #67953]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67953]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67953]	tyrosine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67953]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67953]	acid phosphatase	+	3.1.3.2
[Ref.: #67953]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67953]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67953]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67953]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67953]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67953]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67953]	arginine dihydrolase	+	3.5.3.6
[Ref.: #67953]	beta-galactosidase	-	3.2.1.23
[Ref.: #67953]	beta-glucosidase	+	3.2.1.21
[Ref.: #67953]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67953]	catalase	+	1.11.1.6
[Ref.: #67953]	cystine arylamidase	+	3.4.11.3
[Ref.: #67953]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67953]	esterase (C 4)	+
[Ref.: #67953]	esterase Lipase (C 8)	+
[Ref.: #67953]	leucine arylamidase	+	3.4.11.1
[Ref.: #67953]	lipase (C 14)	+
[Ref.: #67953]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67953]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67953]	trypsin	+	3.4.21.4
[Ref.: #67953]	urease	+	3.5.1.5
[Ref.: #67953]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67953]

Fatty acid	Percentage
C18:1 w7c / C18:1 w6c	44.9
C18:1 w7c 11-Methyl	18.8
C18:0	9.5
C19:0 cyclo w8c	7.9
C16:0	4.3
C15:1 w5c	4
C17:1 w5c ISO	3.6
C17:0	1.7
C16:1 w7c / C16:1 w6c	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine red alga, Stylonema cornu-cervi
[Ref.: #67770]	Host species	Stylonema cornu-cervi
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67953]	Sample type/isolated from	marine red alga, Stylonema cornu-cervi
[Ref.: #67953]	Geographic location (country and/or sea, region)	Yellow (West) Sea
[Ref.: #67953]	Country	Republic of Korea
[Ref.: #67953]	Country ISO 3 Code	KOR
[Ref.: #67953]	Continent	Asia
[Ref.: #67953]	Geographic location	36.9044°/126.1980°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MF629007 (>99% sequence identity) for Oceaniradius stylonematis subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	8
Animal Samples	27
Plant Samples	1
Total Samples	100

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67953]	Oceaniradius stylonematis strain StC1 16S ribosomal RNA gene, partial sequence	MF629007	1407	ENA	2184161 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67953]	Oceaniradius stylonematis StC1	GCA_003149475	scaffold	GenBank	2184161 tax ID
[Ref.: #66792]	Oceaniradius stylonematis StC1	2882483387	draft	JGI IMG/M	2184161 tax ID	*

[Ref.: #67953]

GC-content

64.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceaniradius stylonematis StC1 NCBI: GCA_003149475.2
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32050, KACC 19231

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi.	Jeong SE, Kim KH, Lhee D, Yoon HS, Quan ZX, Lee EY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003413	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67953

Sang Eun Jeong, Kyung Hyun Kim, Duckhyun Lhee, Hwan Su Yoon, Zhe-Xue Quan, En-Young Lee, Che Ok Jeon: Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi. IJSEM 69: 1967 - 1973 2019 ( DOI 10.1099/ijsem.0.003413 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Oceaniradius stylonematis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF