Oceaniradius stylonematis (KACC 19231, JCM 32050, StC1)

Name: Oceaniradius stylonematis (KACC 19231, JCM 32050, StC1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164179

Type strain

Strain Designation StC1

Culture col. no. KACC 19231 JCM 32050 StC1

NCBI tax ID(s) 2184161

Special Collections JCM Literature strains

History C. O. Jeon; Chung-Ang Univ., South Korea; StC1.

Links

Oceaniradius stylonematis StC1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Marine red alga, Stylonema cornu-cervi.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393427

JCM 32050

@ref 20215

Last LPSN update 2026-02-09 11:39:47

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Phyllobacteriaceae

Genus Oceaniradius

Species Oceaniradius stylonematis

Full scientific name Oceaniradius stylonematis Jeong et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
67953	negative	2.6-3.5 µm	0.5-1.0 µm	rod-shaped
125439	negative					99.5

Colony morphology

67953

Colony colorpink

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic
67953	positive	growth	30-45
67953	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
67953	positive	optimum	7
67953	positive	growth	6.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67953	aerobe
125439	aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67953	NaCl	positive	growth	1.0-8.0 %(w/v)
67953	NaCl	positive	optimum	2 %(w/v)

Observation

@ref	Observation
67770	quinones: Q-10
67953	nitrogen gas production
67953	The predominant quinone is Q-10
67953	The major polar lipids are sulfoquinovosyl diacylglycerol, phosphatidylethanolamine and phosphatidylglycerol

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67953	17128 ChEBI	adipate	+	assimilation
67953		casein	-	hydrolysis
67953	17634 ChEBI	D-glucose	+	assimilation
67953	16899 ChEBI	D-mannitol	+	assimilation
67953	16024 ChEBI	D-mannose	+	assimilation
67953	27689 ChEBI	decanoate	-	assimilation
67953	4853 ChEBI	esculin	+	hydrolysis
67953	5291 ChEBI	gelatin	-	hydrolysis
67953	30849 ChEBI	L-arabinose	+	assimilation
67953	25115 ChEBI	malate	+	assimilation
67953	17306 ChEBI	maltose	+	assimilation
67953	59640 ChEBI	N-acetylglucosamine	+	assimilation
67953	17632 ChEBI	nitrate	+	reduction
67953	18401 ChEBI	phenylacetate	+	assimilation
67953	32032 ChEBI	potassium gluconate	+	assimilation
67953	53258 ChEBI	sodium citrate	+	assimilation
67953	28017 ChEBI	starch	-	hydrolysis
67953	53424 ChEBI	tween 20	-	hydrolysis
67953	53426 ChEBI	tween 80	-	hydrolysis
67953	18186 ChEBI	tyrosine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67953	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
67953	acid phosphatase	+	3.1.3.2
67953	alkaline phosphatase	+	3.1.3.1
67953	alpha-chymotrypsin	-	3.4.21.1
67953	alpha-fucosidase	-	3.2.1.51
67953	alpha-galactosidase	-	3.2.1.22
67953	alpha-glucosidase	-	3.2.1.20
67953	alpha-mannosidase	-	3.2.1.24
67953	arginine dihydrolase	+	3.5.3.6
67953	beta-galactosidase	-	3.2.1.23
67953	beta-glucosidase	+	3.2.1.21
67953	beta-glucuronidase	-	3.2.1.31
67953	catalase	+	1.11.1.6
67953	cystine arylamidase	+	3.4.11.3
67953	cytochrome oxidase	+	1.9.3.1
67953	esterase (C 4)	+
67953	esterase Lipase (C 8)	+
67953	leucine arylamidase	+	3.4.11.1
67953	lipase (C 14)	+
67953	N-acetyl-beta-glucosaminidase	-	3.2.1.52
67953	naphthol-AS-BI-phosphohydrolase	+
67953	trypsin	+	3.4.21.4
67953	urease	+	3.5.1.5
67953	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

67953

Fatty acid	Percentage
C18:1 w7c / C18:1 w6c	44.9
C18:1 w7c 11-Methyl	18.8
C18:0	9.5
C19:0 cyclo w8c	7.9
C16:0	4.3
C15:1 w5c	4
C17:1 w5c ISO	3.6
C17:0	1.7
C16:1 w7c / C16:1 w6c	1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Host species
67770	Marine red alga, Stylonema cornu-cervi		Republic of Korea	KOR	Asia			Stylonema cornu-cervi
67953	marine red alga, Stylonema cornu-cervi	Yellow (West) Sea	Republic of Korea	KOR	Asia	36.9044	126.198 36.9044/126.198

Taxonmaps

69479

Global distribution of 16S sequence MF629007 (>99% sequence identity) for Oceaniradius stylonematis subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	8
Animal Samples	27
Plant Samples	1
Total Samples	100

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67953	ASM314947v2 assembly for Oceaniradius stylonematis StC1	scaffold	GCA_003149475	2184161.6	2882483387	2184161	71.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67953	Oceaniradius stylonematis strain StC1 16S ribosomal RNA gene, partial sequence	MF629007	1407		2184161

GC content

@ref	GC-content (mol%)	Method
67953	64.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oceaniradius stylonematis StC1
NCBI: GCA_003149475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	60.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi.	Jeong SE, Kim KH, Lhee D, Yoon HS, Quan ZX, Lee EY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003413	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67953	Sang Eun Jeong, Kyung Hyun Kim, Duckhyun Lhee, Hwan Su Yoon, Zhe-Xue Quan, En-Young Lee, Che Ok Jeon: Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi. IJSEM 69: 1967 - 1973 2019 ( DOI 10.1099/ijsem.0.003413 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceaniradius stylonematis (KACC 19231, JCM 32050, StC1)

Name and taxonomic classification