Name: Aestuariirhabdus litorea JCM 32043
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164177

Type strain:

Species: Aestuariirhabdus litorea

Culture col. no.: JCM 32043, KACC 19788

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; GTF13.

NCBI tax ID(s): 2528527 (species)

Section

Aestuariirhabdus litorea JCM 32043 is a mesophilic bacterium that was isolated from Sea tidal flat at Gangjin Bay in the Republic of Korea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Aestuariirhabdaceae*
	Genus	*Aestuariirhabdus*
	Species	**Aestuariirhabdus litorea**
	Full Scientific Name (LPSN)	Aestuariirhabdus litorea Khan et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8, Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sea tidal flat at Gangjin Bay in the Republic of Korea
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH742310 (>99% sequence identity) for Aestuariirhabdus litorea subclade from Microbeatlas

Aquatic Samples	1264
Soil Samples	109
Animal Samples	420
Plant Samples	15
Total Samples	1808

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Endozoicomonas sp. GTF13 16S ribosomal RNA gene, partial sequence	MH742310	1466	ENA	2528527 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aestuariirhabdus litorea GTF13	GCA_003864255	contig	GenBank	2528527 tax ID

[Ref.: #67770]

GC-content

59.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aestuariirhabdus litorea GTF13 NCBI: GCA_003864255.1
[Ref.: #69480]	motile	yes	89.318	no
[Ref.: #69480]	flagellated	yes	92.542	no
[Ref.: #69480]	gram-positive	no	98.954	no
[Ref.: #69480]	anaerobic	no	92.753	no
[Ref.: #69480]	aerobic	yes	75.059	no
[Ref.: #69480]	halophile	yes	65.988	no
[Ref.: #69480]	spore-forming	no	95.378	no
[Ref.: #69480]	glucose-util	yes	57.988	no
[Ref.: #69480]	thermophile	no	98.842	yes
[Ref.: #69480]	glucose-ferment	no	83.983	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32043, KACC 19788

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariirhabdus litorea gen. nov., sp. nov., isolated from a sea tidal flat and proposal of Aestuariirhabdaceae fam. nov.	Khan SA, Jung HS, Kim HM, Oh J, Lee SS, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003976	2020	*
Phylogeny	Aestuariirhabdus haliotis sp. nov., isolated from abalone viscera and emended description of the genus Aestuariirhabdus.	Zhang DD, Xuan XQ, Ye YQ, Wang YW, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005548	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Aestuariirhabdus litorea in external resources:
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Aestuariirhabdus litorea GTF13

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