Natronobiforma cellulositropha (UNIQEM U972, JCM 31939)

Name: Natronobiforma cellulositropha (UNIQEM U972, JCM 31939)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164158

Type strain

Culture col. no. UNIQEM U972 JCM 31939

NCBI tax ID(s) 1679076

Special Collections JCM

History JCM <-- D. Y. Sorokin; Delft Univ. of Technol., Netherlands; AArcel5.

Links

Natronobiforma cellulositropha JCM 31939 is an archaeon that was isolated from Surface sediments from hypersaline soda lake Tanatar-1.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 394156

JCM 31939

@ref 20215

Last LPSN update 2026-05-29 08:45:20

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natronobiforma

Species Natronobiforma cellulositropha

Full scientific name Natronobiforma cellulositropha Sorokin et al. 2019

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	20

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		93.834

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code
67770	Surface sediments from hypersaline soda lake Tanatar-1	Kulunda, Altai	Russia	RUS

Taxonmaps

69479

Global distribution of 16S sequence MG938052 (>99% sequence identity) for Natronobiforma cellulositropha subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	2
Animal Samples	0
Plant Samples	0
Total Samples	6

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2562924v1 assembly for Natronobiforma cellulositropha JCM 31939	contig	GCA_025629245	1679076.3	8057805285	1679076	65.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Natronobiforma cellulositropha strain AArcel5 16S ribosomal RNA gene, partial sequence	MG938052	1475		1679076

GC content

@ref	GC-content (mol%)	Method
67770	65.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2562924v1 assembly for Natronobiforma cellulositropha JCM 31939
NCBI: GCA_025629245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.84	no
125439	motility	BacteriaNetⓘ	yes	41.09	no
125439	gram_stain	BacteriaNetⓘ	negative	47.20	no
125439	spore_formation	BacteriaNetⓘ	no	93.83	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Natronobiforma cellulositropha JCM 31939
NCBI: GCA_025629245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	78.15	no
125438	anaerobic	anaerobicⓘ	no	82.38	no
125438	aerobic	aerobicⓘ	yes	73.97	no
125438	spore-forming	spore-formingⓘ	no	80.60	no
125438	thermophilic	thermophileⓘ	no	71.80	yes
125438	flagellated	motile2+ⓘ	no	83.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Selective enrichment on a wide polysaccharide spectrum allowed isolation of novel metabolic and taxonomic groups of haloarchaea from hypersaline lakes.	Sorokin DY, Elcheninov AG, Khijniak TV, Kolganova TV, Kublanov IV.	Front Microbiol	10.3389/fmicb.2022.1059347	2022
	Corrigendum to "Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes" [Syst. Appl. Microbiol. 41 (2018) 355-362].	Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Sinninghe Damste JS, Kublanov IV.	Syst Appl Microbiol	10.1016/j.syapm.2018.11.007	2019
	Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes.	Sorokin DY, Elcheninov AG, Bale NJ, Sinninghe Damste JS, Kublanov IV.	Front Microbiol	10.3389/fmicb.2024.1364606	2024
	Natrarchaeobiusversutus sp. nov. and Natrarchaeobius oligotrophus sp. nov., chitinotrophic natronoarchaea from hypersaline soda lakes, and functional genome analysis of the Natrarchaeobius species	Tulenkov A, Elcheninov A, Sorokin D.	Front Microbiol		2025
	Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers.	van Vliet DM, Lin Y, Bale NJ, Koenen M, Villanueva L, Stams AJM, Sanchez-Andrea I.	Microorganisms	10.3390/microorganisms8060920	2020
Phylogeny	Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes.	Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Damste JSS, Kublanov IV	Syst Appl Microbiol	10.1016/j.syapm.2018.04.002	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natronobiforma cellulositropha (UNIQEM U972, JCM 31939)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_025629245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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