Name: Natronobiforma cellulositropha JCM 31939
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164158

Type strain:

Species: Natronobiforma cellulositropha

Culture col. no.: JCM 31939, UNIQEM U972

Strain history: D. Y. Sorokin; Delft Univ. of Technol., Netherlands; AArcel5.

NCBI tax ID(s): 1679076 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Natronobiforma cellulositropha JCM 31939 is a psychrophilic archaeon that was isolated from Surface sediments from hypersaline soda lake Tanatar-1.

psychrophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Natrialbaceae*
	Genus	*Natronobiforma*
	Species	**Natronobiforma cellulositropha**
	Full Scientific Name (LPSN)	Natronobiforma cellulositropha Sorokin et al. 2019

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	20 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface sediments from hypersaline soda lake Tanatar-1
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kulunda, Altai
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MG938052 (>99% sequence identity) for Natronobiforma cellulositropha subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	6

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Natronobiforma cellulositropha strain AArcel5 16S ribosomal RNA gene, partial sequence	MG938052	1475	GenBank ENA	1679076 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Natronobiforma cellulositropha JCM 31939	GCA_025629245	contig	GenBank ENA	1679076 tax ID	*

[Ref.: #67770]

GC-content

65.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Natronobiforma cellulositropha JCM 31939 NCBI: GCA_025629245.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	78.15	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	82.377	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	73.971	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	80.603	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	71.795	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	83	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Natronobiforma cellulositropha JCM 31939 NCBI: GCA_025629245
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	85.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	50.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	66.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	68.7

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31939, UNIQEM U972

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes.	Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Damste JSS, Kublanov IV	Syst Appl Microbiol	10.1016/j.syapm.2018.04.002	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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