Name: Marinobacterium boryeongense DMHB-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164154

Type strain:

Species: Marinobacterium boryeongense

Strain Designation: DMHB-2

Culture col. no.: JCM 31902, KACC 19225

Strain history: K. Y. Jahng; Chungbuk Natl. Univ., South Korea; DMHB-2.

NCBI tax ID(s): 2796289 (species)

Special Collections

Section

Marinobacterium boryeongense DMHB-2 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Seawater collected off the Yellow Sea coast in Boryeong-si.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacterium*
	Species	**Marinobacterium boryeongense**
	Full Scientific Name (LPSN)	Marinobacterium boryeongense Kang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67807]	Gram stain	negative

[Ref.: #67807]	Cell length	1.1-1.3 µm

[Ref.: #67807]	Cell width	0.6-0.7 µm

[Ref.: #67807]	Cell shape	rod-shaped

[Ref.: #67807]	Motility	yes

[Ref.: #67807]	Flagellum arrangement	monotrichous, polar

[Ref.: #67807]	Colony size	1-1.5 mm
[Ref.: #67807]	Colony color	cream
[Ref.: #67807]	Colony shape	circular
[Ref.: #67807]	Incubation period	2 days
[Ref.: #67807]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	25 °C
[Ref.: #67807]	growth	15-45 °C
[Ref.: #67807]	optimum	25 °C

	pH	Kind of pH		pH
[Ref.: #67807]			optimum	6
[Ref.: #67807]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67807]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67807]		NaCl		growth	1-9	%(w/v)
[Ref.: #67807]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67807]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #67807]	2-oxopentanoate ChEBI	+	respiration
[Ref.: #67807]	4-hydroxybutyrate ChEBI	+	respiration
[Ref.: #67807]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #67807]	acetate ChEBI	+	respiration
[Ref.: #67807]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #67807]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #67807]	casein	-	hydrolysis
[Ref.: #67807]	D-glucarate ChEBI	-	respiration
[Ref.: #67807]	esculin ChEBI	-	hydrolysis
[Ref.: #67807]	formate ChEBI	-	respiration
[Ref.: #67807]	gelatin ChEBI	-	hydrolysis
[Ref.: #67807]	glucose ChEBI	+	fermentation
[Ref.: #67807]	glycogen ChEBI	-	respiration
[Ref.: #67807]	L-glutamate ChEBI	+	respiration
[Ref.: #67807]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #67807]	lactate ChEBI	+	respiration
[Ref.: #67807]	methyl pyruvate ChEBI	-	respiration
[Ref.: #67807]	monomethyl succinate ChEBI	+	respiration
[Ref.: #67807]	nitrate ChEBI	-	reduction
[Ref.: #67807]	starch ChEBI	-	hydrolysis
[Ref.: #67807]	succinate ChEBI	+	respiration
[Ref.: #67807]	tween 40 ChEBI	+	respiration
[Ref.: #67807]	tween 80 ChEBI	+	respiration
[Ref.: #67807]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #67807]		polymyxin b ChEBI	yes	100	Unit (disc)

	Metabolite production	Metabolite	Production
[Ref.: #67807]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67807]	alkaline phosphatase	-	3.1.3.1
[Ref.: #67807]	catalase	+	1.11.1.6
[Ref.: #67807]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67807]	leucine arylamidase	+	3.4.11.1
[Ref.: #67807]	naphthol-AS-BI-phosphohydrolase	-

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67807]

Fatty acid	Percentage
C18:1 w7c and/or C18:1 w6c	37.4
C16:1 w7c / C16:1 w6c	26.1
C16:0	17.9
C10:0 3OH	6.5
C12:0	5.8
C17:0 cyclo	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater collected off the Yellow Sea coast in Boryeong-si
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67807]	Sample type/isolated from	seawater
[Ref.: #67807]	Geographic location (country and/or sea, region)	Yellow Sea coast (located in Boryeong-si)
[Ref.: #67807]	Country	Republic of Korea
[Ref.: #67807]	Country ISO 3 Code	KOR
[Ref.: #67807]	Continent	Asia
[Ref.: #67807]	Geographic location	36.5166°/126.8500°
[Ref.: #67807]	Enrichment culture	marine agar 2216
[Ref.: #67807]	Enrichment culture duration	3 days
[Ref.: #67807]	Enrichment culture temperature	25 ̊C
[Ref.: #67807]	Isolation/enrichment procedure	sample was diluted to 10-3 - 10-5 with sterilized 0.9 % saline and spread onto a marine agar 2216
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX832989 (>99% sequence identity) for Marinobacterium boryeongense subclade from Microbeatlas

Aquatic Samples	848
Soil Samples	77
Animal Samples	126
Plant Samples	17
Total Samples	1068

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67807]	Marinobacterium boryeongense strain DMHB-2 16S ribosomal RNA gene, partial sequence	KX832989	1464	GenBank ENA	2796289 tax ID

[Ref.: #67807]

GC-content

60.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31902, KACC 19225

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacterium boryeongense sp. nov., isolated from seawater.	Kang JY, Kim MJ, Chun J, Son KP, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003184	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67807

Ji Young Kang, Mi-Jung Kim, Jeesun Chun, Kyung Pyo Son, Kwang Yeop Jahng: Marinobacterium boryeongense sp. nov., isolated from seawater. IJSEM 69: 493 - 497 2019 ( DOI 10.1099/ijsem.0.003184 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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