Name: Kocuria subflava JCM 31771
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164128

Type strain:

Species: Kocuria subflava

Culture col. no.: JCM 31771, CGMCC 4.7252, KCTC 39547

Strain history: CGMCC 4.7252 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 13062.

NCBI tax ID(s): 1736139 (species)

Section

Kocuria subflava JCM 31771 is a mesophilic, Gram-positive bacterium that was isolated from Marine sediment from the Indian Ocean.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria subflava**
	Full Scientific Name (LPSN)	Kocuria subflava Jiang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.426

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6(H₂), MK-7(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment from the Indian Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KR610332 (>99% sequence identity) for Kocuria subflava subclade from Microbeatlas

Aquatic Samples	220
Soil Samples	14
Animal Samples	818
Plant Samples	10
Total Samples	1062

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kocuria subflava strain YIM 13062 16S ribosomal RNA gene, partial sequence	KR610332	1556	ENA	1736139 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kocuria subflava YIM 13062	GCA_012163155	scaffold	GenBank	1736139 tax ID
[Ref.: #66792]	Kocuria subflava strain YIM 13062	1736139.6	wgs	PATRIC	1736139 tax ID	*

[Ref.: #67770]

GC-content

68 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kocuria subflava YIM 13062 NCBI: GCA_012163155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kocuria subflava strain YIM 13062 PATRIC: 1736139.6
[Ref.: #69480]	motile	no	93.944	no
[Ref.: #69480]	gram-positive	yes	93.001	no
[Ref.: #69480]	anaerobic	no	99.445	no
[Ref.: #69480]	aerobic	yes	79.801	no
[Ref.: #69480]	halophile	yes	57.311	no
[Ref.: #69480]	spore-forming	no	95.83	no
[Ref.: #69480]	thermophile	no	99.542	no
[Ref.: #69480]	glucose-util	yes	87.433	no
[Ref.: #69480]	flagellated	no	97.673	no
[Ref.: #69480]	glucose-ferment	no	58.245	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31771, CGMCC 4.7252, KCTC 39547

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria subflava sp. nov., isolated from marine sediment from the Indian Ocean.	Jiang Z, Zhang WH, Yuan CG, Chen JY, Cao LX, Park DJ, Xiao M, Kim CJ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0587-z	2015	*
Genetics	Draft Genome Sequences of the Kocuria subflava Type Strain KCTC 39547 and Kocuria sp. Strain JC486, a Newly Isolated Strain from a Wild Ass Sanctuary in Gujarat, India.	Uppada J, Chintalapati S, K K, Chintapati VR	Microbiol Resour Announc	10.1128/mra.00535-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Kocuria subflava YIM 13062

Kocuria subflava strain YIM 13062

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