Kineococcus endophyticus (NBRC 108674, KCTC 19886, JCM 31488)

Name: Kineococcus endophyticus (NBRC 108674, KCTC 19886, JCM 31488)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164075

Type strain

Culture col. no. NBRC 108674 KCTC 19886 JCM 31488

NCBI tax ID(s) 1181883

Special Collections JCM KCTC

History JCM <-- KCTC 19886 <-- S. Qin; Jiangsu Normal Univ., China; KLBMP 1274.

Links

Kineococcus endophyticus JCM 31488 is a bacterium that was isolated from Surface-sterilized leaves of the coastal halophyte Limonium sinense Kuntze from the coastal region of Nantong.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27928

JCM 31488,KCTC 19886,NBRC 108674

@ref 20215

Last LPSN update 2026-05-29 08:45:19

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kineosporiales

Family Kineosporiaceae

Genus Kineococcus

Species Kineococcus endophyticus

Full scientific name Kineococcus endophyticus corrig. Bian et al. 2014

Synonyms (1)

Kineococcus endophytica

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.575
125439		90.161

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.595

Observation

67770

Observationquinones: MK-9(H₂)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Surface-sterilized leaves of the coastal halophyte Limonium sinense (Girard) Kuntze from the coastal region of Nantong	Limonium sinense	Jiangsu Province, east of China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ819257 (>99% sequence identity) for Kineococcus endophyticus from Microbeatlas

Aquatic Samples	120
Soil Samples	260
Animal Samples	445
Plant Samples	895
Total Samples	1720

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4079649v1 assembly for Kineococcus endophyticus KCTC 19886	contig	GCA_040796495	1181883	70.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Kineococcus endophyticus strain KLBMP 1274 16S ribosomal RNA gene, partial sequence	JQ819257	1453		1181883
124043	Kineococcus endophyticus strain KCTC 19886 16S ribosomal RNA gene, partial sequence.	PQ643261	1515		1181883

GC content

@ref	GC-content (mol%)	Method
67770	73.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4079649v1 assembly for Kineococcus endophyticus KCTC 19886
NCBI: GCA_040796495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.58	no
125439	motility	BacteriaNetⓘ	no	90.16	no
125439	spore_formation	BacteriaNetⓘ	yes	81.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kineococcus endophytica sp. nov., a novel endophytic actinomycete isolated from a coastal halophyte in Jiangsu, China.	Bian GK, Feng ZZ, Qin S, Xing K, Wang Z, Cao CL, Liu CH, Dai CC, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9757-4	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kineococcus endophyticus (NBRC 108674, KCTC 19886, JCM 31488)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_040796495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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