Name: Deinococcus seoulensis JCM 31404
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164048

Type strain:

Species: Deinococcus seoulensis

Culture col. no.: JCM 31404, KCTC 33793

Strain history: H.-Y. Jung; Kyungpook Natl. Univ., South Korea; 16F1E.

NCBI tax ID(s): 1837379 (species)

Section

Deinococcus seoulensis JCM 31404 is a mesophilic, Gram-positive bacterium that was isolated from Sediment sample collected at Han River in Seoul.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus seoulensis**
	Full Scientific Name (LPSN)	Deinococcus seoulensis Lee et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.181

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected at Han River in Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC148306 (>99% sequence identity) for Deinococcus seoulensis from Microbeatlas

Aquatic Samples	213
Soil Samples	18
Animal Samples	46
Plant Samples	7
Total Samples	284

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus seoulensis gene for 16S ribosomal RNA, partial sequence	LC148306	1451	ENA	1837379 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus seoulensis JCM 31404	GCA_014648115	contig	GenBank	1837379 tax ID	*
[Ref.: #66792]	Deinococcus seoulensis strain JCM 31404	1837379.3	wgs	PATRIC	1837379 tax ID	*

[Ref.: #67770]

GC-content

66.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus seoulensis strain JCM 31404 PATRIC: 1837379.3
[Ref.: #69481]	spore-forming	yes	69	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus seoulensis strain JCM 31404 PATRIC: 1837379.3
[Ref.: #69480]	motile	no	88.966	no
[Ref.: #69480]	gram-positive	yes	78.237	no
[Ref.: #69480]	anaerobic	no	98.371	no
[Ref.: #69480]	aerobic	yes	93.802	no
[Ref.: #69480]	halophile	no	92.481	no
[Ref.: #69480]	spore-forming	no	89.75	no
[Ref.: #69480]	glucose-util	yes	87.62	no
[Ref.: #69480]	flagellated	no	92.45	no
[Ref.: #69480]	glucose-ferment	no	90.22	no
[Ref.: #69480]	thermophile	no	93.491	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31404, KCTC 33793

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea.	Lee JJ, Lee YH, Park SJ, Lim S, Jeong SW, Lee SY, Cho YJ, Kim MK, Jung HY	J Microbiol	10.1007/s12275-016-6253-y	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Deinococcus seoulensis strain JCM 31404

Deinococcus seoulensis strain JCM 31404

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