Name: Pseudomonas neustonica JCM 31285
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164003

Type strain:

Species: Pseudomonas neustonica

Culture col. no.: JCM 31285, KCCM 43194, PAMC 28427

Strain history: C. Y. Hwang; KOPRI, South Korea; PAMC 28427 (=SSM44).

NCBI tax ID(s): 2487346 (species)

Other strains from Pseudomonas neustonica

P. neustonica JCM 31284, KCCM 43193, PAMC 28426 (type strain)

Section

Pseudomonas neustonica JCM 31285 is a psychrophilic bacterium that was isolated from Surface microlayer in coastal seawater of the Ross Sea.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas neustonica**
	Full Scientific Name (LPSN)	Pseudomonas neustonica Jang et al. 2020

Synonym

Neopseudomonas neustonica

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	20 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface microlayer in coastal seawater of the Ross Sea
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KU716041 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	692
Soil Samples	22
Animal Samples	25
Plant Samples	9
Total Samples	748

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas sp. PAMC 28427 16S ribosomal RNA gene, partial sequence	KU716041	1401	ENA	1840333 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas sp. SSM44	GCA_003797905	contig	GenBank	2487347 tax ID

[Ref.: #67770]

GC-content

56.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas sp. SSM44 SSM44 NCBI: GCA_003797905.1
[Ref.: #69480]	motile	yes	92.759	no
[Ref.: #69480]	flagellated	yes	94.03	no
[Ref.: #69480]	gram-positive	no	98.399	no
[Ref.: #69480]	anaerobic	no	98.541	no
[Ref.: #69480]	aerobic	yes	92.057	no
[Ref.: #69480]	halophile	yes	65.062	no
[Ref.: #69480]	spore-forming	no	96.801	no
[Ref.: #69480]	glucose-util	no	67.193	no
[Ref.: #69480]	glucose-ferment	no	91.906	no
[Ref.: #69480]	thermophile	no	99.88	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31285, KCCM 43194, PAMC 28427

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas neustonica sp. nov., isolated from the sea surface microlayer of the Ross Sea (Antarctica).	Jang GI, Lee I, Ha TT, Yoon SJ, Hwang YJ, Yi H, Yun S, Lee WS, Hwang CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004240	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Pseudomonas neustonica in external resources:
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Pseudomonas sp. SSM44 SSM44

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