Name: Glaciihabitans tibetensis JCM 30778
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163876

Type strain:

Species: Glaciihabitans tibetensis

Culture col. no.: JCM 30778, CGMCC 1.12484, KCTC 29148

Strain history: CGMCC 1.12484 <-- Y.-G. Zhou, CGMCC, Inst. of Microbiol., CAS, China; MP203.

NCBI tax ID(s): 1266600 (species)

Section

Glaciihabitans tibetensis JCM 30778 is a psychrophilic, Gram-positive bacterium that was isolated from Ice water of Midui Glacier in Tibet Autonomous Region.

Gram-positive
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Glaciihabitans*
	Species	**Glaciihabitans tibetensis**
	Full Scientific Name (LPSN)	Glaciihabitans tibetensis Li et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.693

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	20 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ice water of Midui Glacier in Tibet Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Frigoribacterium sp. MP203 16S ribosomal RNA gene, partial sequence	KC256953	1480	ENA	1266600 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glaciihabitans tibetensis CGMCC 1.12484	GCA_003003265	contig	GenBank	1266600 tax ID
[Ref.: #66792]	Glaciihabitans tibetensis strain CGMCC 1.12484	1266600.3	wgs	PATRIC	1266600 tax ID	*
[Ref.: #66792]	Glaciihabitans tibetensis CGMCC 1.12484	2718217681	draft	JGI IMG/M	1266600 tax ID	*

[Ref.: #67770]

GC-content

64.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glaciihabitans tibetensis strain CGMCC 1.12484 PATRIC: 1266600.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glaciihabitans tibetensis strain CGMCC 1.12484 PATRIC: 1266600.3
[Ref.: #69480]	motile	no	88.1	no
[Ref.: #69480]	gram-positive	yes	91.446	no
[Ref.: #69480]	anaerobic	no	99.314	no
[Ref.: #69480]	aerobic	yes	91.127	no
[Ref.: #69480]	halophile	no	85.34	no
[Ref.: #69480]	spore-forming	no	92.452	no
[Ref.: #69480]	thermophile	no	99.771	no
[Ref.: #69480]	glucose-util	yes	88.481	no
[Ref.: #69480]	flagellated	no	98.128	no
[Ref.: #69480]	glucose-ferment	no	87.127	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30778, CGMCC 1.12484, KCTC 29148

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacisediminihabitans profunda gen. nov., sp. nov., a member of the family Microbacteriaceae isolated from freshwater sediment.	Zhuo Y, Jin CZ, Jin FJ, Li T, Kang DH, Oh HM, Lee HG, Jin L	Antonie Van Leeuwenhoek	10.1007/s10482-019-01347-8	2019	*
Phylogeny	Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.	Li AH, Liu HC, Xin YH, Kim SG, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.052670-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Glaciihabitans tibetensis strain CGMCC 1.12484

Glaciihabitans tibetensis strain CGMCC 1.12484

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