Name: Paenibacillus oryzisoli JCM 30487
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163811

Type strain:

Species: Paenibacillus oryzisoli

Culture col. no.: JCM 30487, ACCC 19783, LMG 31325

Strain history: X. Zhang; ACCC, China; 1ZS3-15.

NCBI tax ID(s): 1850517 (species)

Section

Paenibacillus oryzisoli JCM 30487 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Rhizosphere soil of rice from Qiyang County of Hunan Province.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	"Paenibacillus oryzisoli"
	Full Scientific Name (LPSN)	Paenibacillus oryzisoli Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.671

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of rice from Qiyang County of Hunan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX236167 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	9
Soil Samples	94
Animal Samples	8
Plant Samples	12
Total Samples	123

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus oryzisoli 16S ribosomal RNA gene, partial sequence	KX236167	1418	ENA	1850517 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus oryzisoli 1ZS3-15	GCA_001653565	scaffold	GenBank	1850517 tax ID

[Ref.: #67770]

GC-content

45.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus oryzisoli 1ZS3-15 NCBI: GCA_001653565.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus oryzisoli 1ZS3-15 NCBI: GCA_001653565.1
[Ref.: #69480]	flagellated	yes	83.626	no
[Ref.: #69480]	gram-positive	yes	84.146	no
[Ref.: #69480]	anaerobic	no	99.19	no
[Ref.: #69480]	aerobic	yes	86.372	no
[Ref.: #69480]	halophile	no	95.941	no
[Ref.: #69480]	spore-forming	yes	92.604	no
[Ref.: #69480]	glucose-util	yes	89.903	no
[Ref.: #69480]	motile	yes	87.179	no
[Ref.: #69480]	thermophile	no	99.824	yes
[Ref.: #69480]	glucose-ferment	no	92.425	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30487, ACCC 19783, LMG 31325

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus oryzisoli sp. nov., isolated from the rhizosphere of rice.	Zhang J, Ma XT, Gao JS, Zhang CW, Zhao JJ, Zhang RJ, Ma LA, Zhang XX	Antonie Van Leeuwenhoek	10.1007/s10482-016-0777-3	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus oryzisoli 1ZS3-15

Paenibacillus oryzisoli 1ZS3-15

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