Name: Nitrosococcus oceani JCM 30415
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163789

Type strain:

Species: Nitrosococcus oceani

Culture col. no.: JCM 30415, ATCC 19707

Strain history: M. G. Klotz; Univ. of N. Carolina at Charlotte, USA; C-107.

NCBI tax ID(s): 323261 (strain), 1229 (species)

SI-ID 11823

LMG 10937, NCIMB 11848, ATCC 19707, BCRC 17464, CCRC 17464

Section

Nitrosococcus oceani JCM 30415 is a mesophilic, Gram-negative bacterium that was isolated from North Atlantic seawater.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Nitrosococcus*
	Species	**Nitrosococcus oceani**
	Full Scientific Name (LPSN)	Nitrosococcus oceani corrig. (Watson 1965) Watson 1971 (Approved Lists 1980)

	Synonym	Nitrosococcus oceanus
	Synonym	"Nitrosocystis* oceanus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %96.966

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.941
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	North Atlantic seawater
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nitrosococcus oceani ATCC 19707 ATCC 19707; JCM30415 (Type strain)	GCA_000012805	complete	GenBank	323261 tax ID	*
[Ref.: #66792]	Nitrosococcus oceani ATCC 19707	323261.6	complete	PATRIC	323261 tax ID	*
[Ref.: #66792]	Nitrosococcus oceani ATCC 19707 strain ATCC 19707; JCM30415 (Type strain)	323261.19	plasmid	PATRIC	323261 tax ID	*
[Ref.: #66792]	Nitrosococcus oceani strain NS58	1229.7	wgs	PATRIC	1229 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nitrosococcus oceani ATCC 19707 ATCC 19707 NCBI: GCA_000012805.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitrosococcus oceani ATCC 19707 ATCC 19707 NCBI: GCA_000012805.1
[Ref.: #69480]	motile	yes	90.647	no
[Ref.: #69480]	flagellated	no	54.412	no
[Ref.: #69480]	gram-positive	no	98.848	no
[Ref.: #69480]	anaerobic	no	93.918	no
[Ref.: #69480]	halophile	no	54.495	no
[Ref.: #69480]	spore-forming	no	89.482	no
[Ref.: #69480]	glucose-util	yes	59.562	no
[Ref.: #69480]	aerobic	no	52.623	no
[Ref.: #69480]	thermophile	no	94.594	yes
[Ref.: #69480]	glucose-ferment	no	85.386	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30415, ATCC 19707

[Ref.: #114137]

SI-ID 11823

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	High Synteny and Sequence Identity between Genomes of Nitrosococcus oceani Strains Isolated from Different Oceanic Gyres Reveals Genome Economization and Autochthonous Clonal Evolution.	Wang L, Lim CK, Klotz MG	Microorganisms	10.3390/microorganisms8050693	2020	*
Genetics	Draft Genome Sequence of Nitrosococcus oceani Strain NS58, a Marine Ammonia-Oxidizing Gammaproteobacterium Isolated from Tokyo Bay Sediment.	Dohra H, Arai K, Urakawa H, Fujiwara T	Microbiol Resour Announc	10.1128/MRA.00923-19	2019	*
Phylogeny	Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis'.	Campbell MA, Chain PS, Dang H, El Sheikh AF, Norton JM, Ward NL, Ward BB, Klotz MG	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.01027.x	2011	*
Metabolism	Ammonia-dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707.	El Sheikh AF, Klotz MG	Environ Microbiol	10.1111/j.1462-2920.2008.01766.x	2008	*
Metabolism	Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707.	Klotz MG, Arp DJ, Chain PS, El-Sheikh AF, Hauser LJ, Hommes NG, Larimer FW, Malfatti SA, Norton JM, Poret-Peterson AT, Vergez LM, Ward BB	Appl Environ Microbiol	10.1128/AEM.00463-06	2006	*
Metabolism	Susceptibility of ammonia-oxidizing bacteria to nitrification inhibitors.	Matsuba D, Takazaki H, Sato Y, Takahashi R, Tokuyama T, Wakabayashi K	Z Naturforsch C J Biosci	10.1515/znc-2003-3-424	2003	*
Metabolism	The amo operon in marine, ammonia-oxidizing gamma-proteobacteria.	Alzerreca JJ, Norton JM, Klotz MG	FEMS Microbiol Lett	10.1111/j.1574-6968.1999.tb08773.x	1999	*
	Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707.	El Sheikh AF, Poret-Peterson AT, Klotz MG	Appl Environ Microbiol	10.1128/AEM.01654-07	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID11823.1 )

* These data were automatically processed and therefore are not curated

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Nitrosococcus oceani ATCC 19707 ATCC 19707

Nitrosococcus oceani ATCC 19707 ATCC 19707

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