Name: Kangiella profundi JCM 30232
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163748

Type strain:

Species: Kangiella profundi

Culture col. no.: JCM 30232, CGMCC 1.12959, KCTC 42297

Strain history: J. Xu; Shanghai Jiao Tong Univ., China; FT102.

NCBI tax ID(s): 1561924 (species)

Section

Kangiella profundi JCM 30232 is a mesophilic bacterium that was isolated from Deep-sea sediment at a depth of 2,784 m.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Kangiellaceae*
	Genus	*Kangiella*
	Species	**Kangiella profundi**
	Full Scientific Name (LPSN)	Kangiella profundi Xu et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment at a depth of 2,784 m
[Ref.: #67770]	Geographic location (country and/or sea, region)	south-west Indian Ocean
[Ref.: #67770]	Country	Indian Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM209197 (>99% sequence identity) for Kangiella from Microbeatlas

Aquatic Samples	628
Soil Samples	163
Animal Samples	139
Plant Samples	48
Total Samples	978

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kangiella profundi strain FT102 16S ribosomal RNA gene, partial sequence	KM209197	1500	ENA	1561924 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kangiella profundi FT102	GCA_002838765	complete	GenBank	1561924 tax ID
[Ref.: #66792]	Kangiella profundi CGMCC 1.12959	GCA_014640235	scaffold	GenBank	1561924 tax ID	*
[Ref.: #66792]	Kangiella profundi strain CGMCC 1.12959	1561924.8	wgs	PATRIC	1561924 tax ID	*

[Ref.: #67770]

GC-content

45 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kangiella profundi CGMCC 1.12959 NCBI: GCA_014640235.1
[Ref.: #69480]	flagellated	no	91.831	no
[Ref.: #69480]	gram-positive	no	98.987	no
[Ref.: #69480]	anaerobic	no	98.628	no
[Ref.: #69480]	aerobic	yes	78.372	no
[Ref.: #69480]	halophile	no	77.307	no
[Ref.: #69480]	spore-forming	no	96.245	no
[Ref.: #69480]	glucose-util	yes	79.78	no
[Ref.: #69480]	thermophile	no	97.906	yes
[Ref.: #69480]	motile	no	87.075	no
[Ref.: #69480]	glucose-ferment	no	84.688	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30232, CGMCC 1.12959, KCTC 42297

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kangiella profundi sp. nov., isolated from deep-sea sediment.	Xu FD, Li XG, Xiao X, Xu J	Int J Syst Evol Microbiol	10.1099/ijs.0.000257	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Kangiella profundi CGMCC 1.12959

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