Name: Qipengyuania sediminis JCM 30182
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163731

Type strain:

Species: Qipengyuania sediminis

Culture col. no.: JCM 30182, CGMCC 1.12928

Strain history: J. Lv; Beijing Univ. of Chem. Technol., China; M1.

NCBI tax ID(s): 1532023 (species)

Section

Qipengyuania sediminis JCM 30182 is a mesophilic, Gram-negative bacterium that was isolated from Borehole sediment sample of Qiangtang Basin in Qinghai-Tibetan plateau.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Qipengyuania*
	Species	**Qipengyuania sediminis**
	Full Scientific Name (LPSN)	Qipengyuania sediminis Feng et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.984

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.959
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Borehole sediment sample of Qiangtang Basin in Qinghai-Tibetan plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Qipengyuania sediminis 16S ribosomal RNA gene, partial sequence	KJ734993	1452	ENA	1532023 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Qipengyuania sediminis CGMCC 1.12928	GCA_004358425	complete	GenBank	1532023 tax ID	*
[Ref.: #66792]	Qipengyuania sediminis strain CGMCC 1.12928	1532023.4	complete	PATRIC	1532023 tax ID	*
[Ref.: #66792]	Qipengyuania sediminis CGMCC 1.12928	2887099864	complete	JGI IMG/M	1532023 tax ID	*

[Ref.: #67770]	GC-content	73.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	66.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Qipengyuania sediminis CGMCC 1.12928 NCBI: GCA_004358425.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Qipengyuania sediminis CGMCC 1.12928 NCBI: GCA_004358425.1
[Ref.: #69480]	flagellated	no	96.471	no
[Ref.: #69480]	gram-positive	no	97.839	no
[Ref.: #69480]	anaerobic	no	98.781	no
[Ref.: #69480]	aerobic	yes	86.007	no
[Ref.: #69480]	halophile	no	94.523	no
[Ref.: #69480]	spore-forming	no	93.483	no
[Ref.: #69480]	glucose-util	yes	83.343	no
[Ref.: #69480]	thermophile	no	93.316	no
[Ref.: #69480]	motile	no	81.863	no
[Ref.: #69480]	glucose-ferment	no	91.333	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30182, CGMCC 1.12928

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Qipengyuania thermophila sp. nov., isolated from a Chinese hot spring.	Zhao ZY, Xia TT, Jiao JY, Liu L, Su QY, Li MM, Lv AP, Ouyang YT, Li WJ, Ming H	Arch Microbiol	10.1007/s00203-022-02927-5	2022	*
Genetics	Complete Genome Sequence of Qipengyuania sediminis CGMCC 1.12928(T), Shed Light on Its Role in Matter-Cycle and Cold Adaption Mechanism of the Genus Qipengyuania.	Gao Y, Wu YH, Xu L, Cheng H, Wang CS, Xu XW	Curr Microbiol	10.1007/s00284-019-01712-w	2019	*
Phylogeny	Qipengyuania sediminis gen. nov., sp. nov., a member of the family Erythrobacteraceae isolated from subterrestrial sediment.	Feng XM, Mo YX, Han L, Nogi Y, Zhu YH, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000472	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Qipengyuania sediminis CGMCC 1.12928

Qipengyuania sediminis CGMCC 1.12928

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