Name: Chitinophaga qingshengii JCM 30026
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163689

Type strain:

Species: Chitinophaga qingshengii

Culture col. no.: JCM 30026, CCTCC AB 2014201

Strain history: X. Sheng JN246 <-- C. Cheng.

NCBI tax ID(s): 1569794 (species)

Section

Chitinophaga qingshengii JCM 30026 is a mesophilic, Gram-negative bacterium that was isolated from Surfaces of weathered rock.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	**Chitinophaga qingshengii**
	Full Scientific Name (LPSN)	Chitinophaga qingshengii Cheng et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.899

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.341
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surfaces of weathered rock
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangning, Nanjing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF150484 (>99% sequence identity) for Chitinophaga qingshengii from Microbeatlas

Aquatic Samples	13
Soil Samples	67
Animal Samples	27
Plant Samples	10
Total Samples	117

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chitinophaga qingshengii strain JN246 16S ribosomal RNA gene, partial sequence	KF150484	1514	ENA	1569794 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chitinophaga qingshengii JCM 30026	GCA_014529935	contig	GenBank	1569794 tax ID
[Ref.: #66792]	Chitinophaga qingshengii strain JCM 30026	1569794.3	wgs	PATRIC	1569794 tax ID	*
[Ref.: #66792]	Chitinophaga qingshengii JCM 30026	2920742621	draft	JGI IMG/M	1569794 tax ID	*

[Ref.: #67770]

GC-content

48.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chitinophaga qingshengii strain JCM 30026 PATRIC: 1569794.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chitinophaga qingshengii strain JCM 30026 PATRIC: 1569794.3
[Ref.: #69480]	motile	no	91.737	no
[Ref.: #69480]	gram-positive	no	97.555	no
[Ref.: #69480]	anaerobic	no	99.41	no
[Ref.: #69480]	aerobic	yes	91.292	no
[Ref.: #69480]	halophile	no	94.794	no
[Ref.: #69480]	spore-forming	no	88.645	no
[Ref.: #69480]	thermophile	no	99.537	yes
[Ref.: #69480]	glucose-util	yes	86.779	no
[Ref.: #69480]	flagellated	no	97.013	no
[Ref.: #69480]	glucose-ferment	no	84.016	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30026, CCTCC AB 2014201

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinophaga varians sp. nov., isolated from forest soil.	Lv YY, Zhang XJ, Li AZ, Zou WL, Feng GD, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002700	2018	*
Phylogeny	Chitinophaga qingshengii sp. nov., isolated from weathered rock surface.	Cheng C, Wang Q, He LY, Huang Z, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijs.0.070516-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Chitinophaga qingshengii strain JCM 30026

Chitinophaga qingshengii strain JCM 30026

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