Name: Tateyamaria omphalii JCM 21569
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163231

Type strain:

Species: Tateyamaria omphalii

Culture col. no.: JCM 21569, IAM 15108, KCTC 12333

Strain history: IAM 15108 <-- M. Kurahashi MKT107.

NCBI tax ID(s): 299262 (species)

SI-ID 324006

IAM 15108, JCM 21569, KCTC 12333

Section

Tateyamaria omphalii JCM 21569 is a mesophilic bacterium that was isolated from Gastrointestinal tract of the molluscan top shell Omphalius pfeifferi pfeifferi collected on the coast of Japan.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Tateyamaria*
	Species	**Tateyamaria omphalii**
	Full Scientific Name (LPSN)	Tateyamaria omphalii Kurahashi and Yokota 2008

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Gastrointestinal tract of the molluscan top shell Omphalius pfeifferi pfeifferi collected on the coast of Japan
[Ref.: #67770]	Host species	Omphalius pfeifferi pfeifferi
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB193438 (>99% sequence identity) for Tateyamaria omphalii subclade from Microbeatlas

Aquatic Samples	557
Soil Samples	5
Animal Samples	30
Plant Samples	4
Total Samples	596

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tateyamaria omphalii gene for 16S rRNA, partial sequence	AB193438	1386	ENA	299262 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tateyamaria omphalii KCTC 12333	GCA_014651375	scaffold	GenBank	299262 tax ID	*
[Ref.: #66792]	Tateyamaria omphalii strain KCTC 12333	299262.50	wgs	PATRIC	299262 tax ID	*

[Ref.: #67770]

GC-content

61.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tateyamaria omphalii KCTC 12333 NCBI: GCA_014651375.1
[Ref.: #69480]	flagellated	no	84.917	no
[Ref.: #69480]	gram-positive	no	98.293	no
[Ref.: #69480]	anaerobic	no	97.907	no
[Ref.: #69480]	aerobic	yes	93.924	no
[Ref.: #69480]	halophile	yes	82.278	no
[Ref.: #69480]	spore-forming	no	95.081	no
[Ref.: #69480]	thermophile	no	99.086	no
[Ref.: #69480]	glucose-util	yes	77.453	no
[Ref.: #69480]	motile	yes	56.385	no
[Ref.: #69480]	glucose-ferment	no	91.16	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 21569, IAM 15108, KCTC 12333

[Ref.: #113973]

SI-ID 324006

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and polyphasic identification of Tateyamaria armeniaca sp. nov.	Yoon J	FEMS Microbiol Lett	10.1093/femsle/fnz182	2019	*
Phylogeny	Tateyamaria omphalii gen. nov., sp. nov., an alpha-Proteobacterium isolated from a top shell Omphalius pfeifferi pfeifferi.	Kurahashi M, Yokota A	Syst Appl Microbiol	10.1016/j.syapm.2006.11.007	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113973

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID324006.1 )

* These data were automatically processed and therefore are not curated

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Tateyamaria omphalii KCTC 12333

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