Name: Heyndrickxia vini JCM 19841
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162626

Type strain:

Species: Heyndrickxia vini

Culture col. no.: JCM 19841, ACCC 06413

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0415.

NCBI tax ID(s): 1476025 (species)

Section

Heyndrickxia vini JCM 19841 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Alcohol fermentation pit mud used for Luzhou-flavour liquor production.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Heyndrickxia*
	Species	**Heyndrickxia vini**
	Full Scientific Name (LPSN)	Heyndrickxia vini (Ma et al. 2017) Gupta et al. 2020

Synonym

Bacillus vini

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.29

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	35 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7, MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Alcohol fermentation pit mud used for Luzhou-flavour liquor production
[Ref.: #67770]	Host species	Luzhou-flavour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sichuan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus vini strain LAM0415 16S ribosomal RNA gene, partial sequence	KJ005123	1460	ENA	1476025 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Heyndrickxia vini JCM 19841	GCA_016772275	complete	GenBank	1476025 tax ID	*
[Ref.: #66792]	Bacillus vini strain JCM 19841	1476025.3	complete	PATRIC	1476025 tax ID	*

[Ref.: #67770]

GC-content

34.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Heyndrickxia vini JCM 19841 NCBI: GCA_016772275.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Heyndrickxia vini JCM 19841 NCBI: GCA_016772275.1
[Ref.: #69480]	flagellated	yes	75.001	no
[Ref.: #69480]	gram-positive	yes	75.478	no
[Ref.: #69480]	anaerobic	no	98.634	no
[Ref.: #69480]	aerobic	yes	91.709	no
[Ref.: #69480]	halophile	yes	54.69	no
[Ref.: #69480]	spore-forming	yes	94.098	no
[Ref.: #69480]	thermophile	no	96.515	yes
[Ref.: #69480]	glucose-util	yes	88.162	no
[Ref.: #69480]	motile	yes	88.704	no
[Ref.: #69480]	glucose-ferment	no	90.171	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19841, ACCC 06413

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Taxonomic Evaluation of the Heyndrickxia (Basonym Bacillus) sporothermodurans Group (H. sporothermodurans, H. vini, H. oleronia) Based on Whole Genome Sequences.	Fiedler G, Herbstmann AD, Doll E, Wenning M, Brinks E, Kabisch J, Breitenwieser F, Lappann M, Bohnlein C, Franz CMAP	Microorganisms	10.3390/microorganisms9020246	2021	*
Phylogeny	Bacillus vini sp. nov. isolated from alcohol fermentation pit mud.	Ma K, Chen X, Guo X, Wang Y, Wang H, Zhou S, Song J, Kong D, Zhu J, Dong W, He M, Hu G, Zhao B, Ruan Z	Arch Microbiol	10.1007/s00203-016-1218-4	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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