Name: Tamlana sedimentorum JCM 19808
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162618

Type strain:

Species: Tamlana sedimentorum

Culture col. no.: JCM 19808, KMM 9545, NRIC 0921

Strain history: NRIC 0921 <-- KMM 9545 <-- n6.

NCBI tax ID(s): 1435349 (species)

Section

Tamlana sedimentorum JCM 19808 is a mesophilic, Gram-negative bacterium that was isolated from Marine sand sediment from The Sea of Japan.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tamlana*
	Species	**Tamlana sedimentorum**
	Full Scientific Name (LPSN)	Tamlana sedimentorum Romanenko et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.929

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sand sediment from The Sea of Japan
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB894238 (>99% sequence identity) for Tamlana sedimentorum from Microbeatlas

Aquatic Samples	13
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	18

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tamlana sedimentorum gene for 16S ribosomal RNA, partial sequence	AB894238	1490	ENA	1435349 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tamlana sedimentorum JCM 19808	GCA_000943565	contig	GenBank	1435349 tax ID
[Ref.: #66792]	Tamlana sedimentorum strain JCM 19808	1435349.4	wgs	PATRIC	1435349 tax ID	*
[Ref.: #66792]	Tamlana sedimentorum JCM 19808	2636415452	draft	JGI IMG/M	1435349 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tamlana sedimentorum strain JCM 19808 PATRIC: 1435349.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tamlana sedimentorum strain JCM 19808 PATRIC: 1435349.4
[Ref.: #69480]	motile	no	89.112	no
[Ref.: #69480]	gram-positive	no	98.093	no
[Ref.: #69480]	anaerobic	no	99.363	no
[Ref.: #69480]	halophile	no	72.395	no
[Ref.: #69480]	spore-forming	no	96.387	no
[Ref.: #69480]	thermophile	no	99.207	yes
[Ref.: #69480]	glucose-util	yes	87.435	no
[Ref.: #69480]	aerobic	yes	87.144	no
[Ref.: #69480]	flagellated	no	93.944	no
[Ref.: #69480]	glucose-ferment	no	88.251	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19808, KMM 9545, NRIC 0921

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tamlana carrageenivorans sp. nov., a carrageenan-degrading bacterium isolated from seawater.	Jung J, Bae SS, Chung D, Baek K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003318	2019	*
Phylogeny	Tamlana nanhaiensis sp. nov., isolated from surface seawater collected from the South China Sea.	Liu X, Lai Q, Du Y, Li G, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0410-x	2015	*
Phylogeny	Tamlana sedimentorum sp. nov., isolated from shallow sand sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Kurilenko VV, Svetashev VI	Int J Syst Evol Microbiol	10.1099/ijs.0.061812-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Tamlana sedimentorum strain JCM 19808

Tamlana sedimentorum strain JCM 19808

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