Name: Streptomyces amritsarensis JCM 19660
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162582

Type strain:

Species: Streptomyces amritsarensis

Culture col. no.: JCM 19660, MTCC 11845

Strain history: R. K. Manhas 2A.

NCBI tax ID(s): 681158 (species)

Section

Streptomyces amritsarensis JCM 19660 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil from Guru Nanak Dev Univ..

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces amritsarensis**
	Full Scientific Name (LPSN)	Streptomyces amritsarensis Sharma et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.808

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]	Observation	Production of Antimicrobial lipopeptide active against a variety of Gram-positive bacteria especially MRSA
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₈), MK-9(H₁₀)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Guru Nanak Dev Univ.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Amritsar, Punjab
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ906975 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	230
Soil Samples	4236
Animal Samples	299
Plant Samples	1307
Total Samples	6072

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces amritsarensis 16S ribosomal RNA gene, partial sequence	GQ906975	1463	ENA	681158 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces amritsarensis MTCC 11845	GCA_001953875	scaffold	GenBank	681158 tax ID
[Ref.: #66792]	Streptomyces amritsarensis strain MTCC 11845	681158.4	wgs	PATRIC	681158 tax ID	*
[Ref.: #66792]	Streptomyces amritsarensis MTCC 11845	2791355426	draft	JGI IMG/M	681158 tax ID	*

[Ref.: #67770]	GC-content	69.5-71.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.6 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces amritsarensis MTCC 11845 NCBI: GCA_001953875.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces amritsarensis strain MTCC 11845 PATRIC: 681158.4
[Ref.: #69480]	gram-positive	yes	88.663	no
[Ref.: #69480]	anaerobic	no	98.811	no
[Ref.: #69480]	halophile	no	94.851	no
[Ref.: #69480]	spore-forming	yes	92.682	no
[Ref.: #69480]	glucose-util	yes	89.878	no
[Ref.: #69480]	thermophile	no	99.392	yes
[Ref.: #69480]	flagellated	no	97.004	no
[Ref.: #69480]	motile	no	93.769	no
[Ref.: #69480]	aerobic	yes	89.094	no
[Ref.: #69480]	glucose-ferment	no	89.054	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19660, MTCC 11845

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification and characterization of a novel lipopeptide from Streptomyces amritsarensis sp. nov. active against methicillin-resistant Staphylococcus aureus.	Sharma D, Mandal SM, Manhas RK	AMB Express	10.1186/s13568-014-0050-y	2014	*
Phylogeny	Streptomyces yangpuensis sp. nov., isolated from soil.	Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000861	2015	*
Phylogeny	Streptomyces amritsarensis sp. nov., exhibiting broad-spectrum antimicrobial activity.	Sharma D, Mayilraj S, Manhas RK	Antonie Van Leeuwenhoek	10.1007/s10482-014-0151-2	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces amritsarensis MTCC 11845

Streptomyces amritsarensis strain MTCC 11845

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