Name: Sphingobacterium yamdrokense JCM 19397
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162493

Type strain:

Species: Sphingobacterium yamdrokense

Culture col. no.: JCM 19397, CGMCC 1.12560

Strain history: N. Xiao 3-0-1.

NCBI tax ID(s): 1378309 (species)

Section

Sphingobacterium yamdrokense JCM 19397 is a mesophilic bacterium that was isolated from Surface water of Lake Yamdrok on the Tibetan Plateau.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	"Sphingobacterium"
	Species	"Sphingobacterium yamdrokense"
	Full Scientific Name (LPSN)	Sphingobacterium yamdrokense Xiao et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface water of Lake Yamdrok on the Tibetan Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC904977 (>99% sequence identity) for Sphingobacterium from Microbeatlas

Aquatic Samples	257
Soil Samples	648
Animal Samples	951
Plant Samples	89
Total Samples	1945

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium yamdrokense strain 3-0-1 16S ribosomal RNA gene, partial sequence	KC904977	1490	ENA	1378309 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19397, CGMCC 1.12560

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium yamdrokense sp. nov., isolated from Lake Yamdrok.	Xiao N, Liu Y, Gu Z, Liu X, Jiao N, Liu H, Zhou Y, Shen L	Antonie Van Leeuwenhoek	10.1007/s10482-015-0428-0	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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