Name: Devosia pacifica JCM 19305
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162476

Type strain:

Species: Devosia pacifica

Culture col. no.: JCM 19305, KCTC 32437

Strain history: Y. Jia and M. Wu NH131.

NCBI tax ID(s): 1335967 (species)

Section

Devosia pacifica JCM 19305 is a mesophilic, Gram-negative bacterium that was isolated from Deep-sea sediment from the South China Sea.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Devosiaceae*
	Genus	*Devosia*
	Species	**Devosia pacifica**
	Full Scientific Name (LPSN)	Devosia pacifica Jia et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.975

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.984
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment from the South China Sea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Devosia pacifica strain NH131 16S ribosomal RNA gene, partial sequence	KF111722	1445	ENA	1335967 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Devosia pacifica KCTC 32437	GCA_014652635	scaffold	GenBank	1335967 tax ID	*
[Ref.: #66792]	Devosia pacifica strain KCTC 32437	1335967.3	wgs	PATRIC	1335967 tax ID	*

[Ref.: #67770]

GC-content

63 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Devosia pacifica KCTC 32437 NCBI: GCA_014652635.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Devosia pacifica KCTC 32437 NCBI: GCA_014652635.1
[Ref.: #69480]	motile	yes	81.064	no
[Ref.: #69480]	flagellated	no	80.499	no
[Ref.: #69480]	gram-positive	no	95.853	no
[Ref.: #69480]	anaerobic	no	99.066	no
[Ref.: #69480]	aerobic	yes	91.97	no
[Ref.: #69480]	halophile	no	85.16	no
[Ref.: #69480]	spore-forming	no	96.045	no
[Ref.: #69480]	glucose-util	yes	88.455	no
[Ref.: #69480]	thermophile	no	98.183	yes
[Ref.: #69480]	glucose-ferment	no	89.693	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19305, KCTC 32437

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Devosia pacifica sp. nov., isolated from deep-sea sediment.	Jia YY, Sun C, Pan J, Zhang WY, Zhang XQ, Huo YY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.059626-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Devosia pacifica KCTC 32437

Devosia pacifica KCTC 32437

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