Name: Paenibacillus pinisoli JCM 19203
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162429

Type strain:

Species: Paenibacillus pinisoli

Culture col. no.: JCM 19203, KACC 17472, KEMB 9005-025

Strain history: J. Kim NB5.

NCBI tax ID(s): 1276110 (species)

Section

Paenibacillus pinisoli JCM 19203 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Surface soil in a pine tree forest at Kyonggi Univ..

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus pinisoli**
	Full Scientific Name (LPSN)	Paenibacillus pinisoli corrig. Moon and Kim 2014

Synonym

Paenibacillus pinesoli

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %98.744

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface soil in a pine tree forest at Kyonggi Univ.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Suwon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC415175 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	34
Soil Samples	484
Animal Samples	150
Plant Samples	33
Total Samples	701

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus pinisoli 16S ribosomal RNA gene, partial sequence	KC415175	1487	ENA	1276110 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus pinisoli JCM 19203	GCA_003605435	contig	GenBank	1276110 tax ID
[Ref.: #66792]	Paenibacillus pinisoli strain JCM 19203	1276110.3	wgs	PATRIC	1276110 tax ID	*
[Ref.: #66792]	Paenibacillus pinisoli JCM 19203	2925320518	draft	JGI IMG/M	1276110 tax ID	*

[Ref.: #67770]

GC-content

54.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus pinisoli strain JCM 19203 PATRIC: 1276110.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus pinisoli strain JCM 19203 PATRIC: 1276110.3
[Ref.: #69480]	motile	yes	87.724	no
[Ref.: #69480]	gram-positive	yes	87.258	no
[Ref.: #69480]	anaerobic	no	99.062	no
[Ref.: #69480]	aerobic	yes	86.876	no
[Ref.: #69480]	halophile	no	87.183	no
[Ref.: #69480]	spore-forming	yes	95.24	no
[Ref.: #69480]	thermophile	no	99.727	yes
[Ref.: #69480]	glucose-util	yes	87.863	no
[Ref.: #69480]	flagellated	yes	83.454	no
[Ref.: #69480]	glucose-ferment	no	85.067	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19203, KACC 17472, KEMB 9005-025

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillusoryzae sp. nov., isolated from rice roots.	Zhang J, Ma XT, Gao JS, Zhao JJ, Yin HQ, Zhang CW, Zhang RJ, Zhang XX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001459	2016	*
Phylogeny	Isolation of Paenibacillus pinesoli sp. nov. from forest soil in Gyeonggi-Do, Korea.	Moon J, Kim J	J Microbiol	10.1007/s12275-014-3622-2	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus pinisoli strain JCM 19203

Paenibacillus pinisoli strain JCM 19203

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