Name: Cutibacterium acnes subsp. elongatum JCM 18919
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162345

Type strain:

Species: Cutibacterium acnes subsp. elongatum

Culture col. no.: JCM 18919, NCTC 13655

Strain history: I. Dekio K124.

NCBI tax ID(s): 1734926 (subspecies)

Other strains from Cutibacterium acnes subsp. elongatum

C. acnes subsp. elongatum JCM 18909
C. acnes subsp. elongatum JCM 18925

Section

Cutibacterium acnes subsp. elongatum JCM 18919 is a mesophilic, Gram-positive bacterium that was isolated from Non-eczematous face skin of atopic dermatitis patient.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Cutibacterium*
	Species	**Cutibacterium acnes subsp. elongatum**
	Full Scientific Name (LPSN)	Cutibacterium acnes subsp. elongatum (Dekio et al. 2015) Dekio et al. 2019

Synonym

Propionibacterium acnes subsp. elongatum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.719

[Ref.: #69480]	Motility	no Confidence in %94.745

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Non-eczematous face skin of atopic dermatitis patient
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB777861 (>99% sequence identity) for Cutibacterium acnes from Microbeatlas

Aquatic Samples	7473
Soil Samples	3573
Animal Samples	47966
Plant Samples	1257
Total Samples	60269

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cutibacterium acnes gene for 16S ribosomal RNA, partial sequence, strain: K124	AB777861	1252	ENA	1734926 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cutibacterium acnes subsp. elongatum K124	GCA_003131265	contig	GenBank	1734926 tax ID
[Ref.: #66792]	Cutibacterium acnes strain JCM 18919 strain K124	1747.233	wgs	PATRIC	1747 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cutibacterium acnes strain JCM 18919 strain K124 PATRIC: 1747.233
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cutibacterium acnes strain JCM 18919 strain K124 PATRIC: 1747.233
[Ref.: #69480]	motile	no	91.952	no
[Ref.: #69480]	gram-positive	yes	87.107	no
[Ref.: #69480]	anaerobic	no	51.479	no
[Ref.: #69480]	aerobic	no	85.538	no
[Ref.: #69480]	halophile	no	85.922	no
[Ref.: #69480]	spore-forming	no	90.398	no
[Ref.: #69480]	thermophile	no	76.075	yes
[Ref.: #69480]	glucose-util	yes	91.387	no
[Ref.: #69480]	flagellated	no	97.863	no
[Ref.: #69480]	glucose-ferment	yes	80.552	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18919, NCTC 13655

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens.	Dekio I, McDowell A, Sakamoto M, Tomida S, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003274	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Cutibacterium acnes strain JCM 18919 strain K124

Cutibacterium acnes strain JCM 18919 strain K124

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