Name: Novosphingobium arabidopsis JCM 18896
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162324

Type strain:

Species: Novosphingobium arabidopsis

Culture col. no.: JCM 18896, BCRC 80571

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-ALB-2.

NCBI tax ID(s): 1305696 (species)

Section

Novosphingobium arabidopsis JCM 18896 is a mesophilic bacterium that was isolated from Rhizosphere of Arabidopsis thaliana.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium arabidopsis**
	Full Scientific Name (LPSN)	Novosphingobium arabidopsis Lin et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of Arabidopsis thaliana
[Ref.: #67770]	Host species	Arabidopsis thaliana
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC479803 (>99% sequence identity) for Novosphingobium arabidopsis subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	17
Animal Samples	6
Plant Samples	23
Total Samples	107

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Novosphingobium arabidopsis strain CC-ALB-2 from Taiwan 16S ribosomal RNA gene, partial sequence	KC479803	1446	ENA	1305696 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium sp. JCM 18896 ALB-2	GCA_025938095	contig	GenBank	2989731 tax ID	*

[Ref.: #67770]

GC-content

68.8-69 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Novosphingobium sp. JCM 18896 ALB-2 NCBI: GCA_025938095.1
[Ref.: #69480]	motile	yes	61.576	no
[Ref.: #69480]	flagellated	no	86.992	no
[Ref.: #69480]	gram-positive	no	97.255	no
[Ref.: #69480]	anaerobic	no	98.707	no
[Ref.: #69480]	aerobic	yes	91.997	no
[Ref.: #69480]	halophile	no	95.92	no
[Ref.: #69480]	spore-forming	no	92.852	no
[Ref.: #69480]	glucose-ferment	no	93.973	no
[Ref.: #69480]	thermophile	no	99.021	yes
[Ref.: #69480]	glucose-util	yes	86.503	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18896, BCRC 80571

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium arabidopsis sp. nov., a DDT-resistant bacterium isolated from the rhizosphere of Arabidopsis thaliana.	Lin SY, Hameed A, Liu YC, Hsu YH, Lai WA, Huang HI, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.054460-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Novosphingobium sp. JCM 18896 ALB-2

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