Name: Fulvimarina manganoxydans JCM 18890
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162321

Type strain:

Species: Fulvimarina manganoxydans

Culture col. no.: JCM 18890, CGMCC 1.10972

Strain history: X. Dai 8047.

NCBI tax ID(s): 937218 (species)

Section

Fulvimarina manganoxydans JCM 18890 is a mesophilic, Gram-negative bacterium that was isolated from Hydrothermal plume in the south-west Indian Ocean.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aurantimonadaceae*
	Genus	*Fulvimarina*
	Species	**Fulvimarina manganoxydans**
	Full Scientific Name (LPSN)	Fulvimarina manganoxydans Ren et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Hydrothermal plume in the south-west Indian Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HQ622550 (>99% sequence identity) for Fulvimarina manganoxydans subclade from Microbeatlas

Aquatic Samples	1619
Soil Samples	135
Animal Samples	56
Plant Samples	61
Total Samples	1871

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fulvimarina manganoxydans strain 8047 16S ribosomal RNA gene, partial sequence	HQ622550	1449	ENA	937218 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fulvimarina manganoxydans CGMCC 1.10972	GCA_900176465	contig	GenBank	937218 tax ID	*
[Ref.: #66792]	Fulvimarina manganoxydans strain CGMCC 1.10972	937218.3	wgs	PATRIC	937218 tax ID	*
[Ref.: #66792]	Fulvimarina manganoxydans CGMCC 1.10972	2718217637	draft	JGI IMG/M	937218 tax ID	*

[Ref.: #67770]

GC-content

61.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fulvimarina manganoxydans strain CGMCC 1.10972 PATRIC: 937218.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fulvimarina manganoxydans strain CGMCC 1.10972 PATRIC: 937218.3
[Ref.: #69480]	motile	yes	85.285	no
[Ref.: #69480]	flagellated	no	57.043	no
[Ref.: #69480]	gram-positive	no	98.093	no
[Ref.: #69480]	anaerobic	no	97.051	no
[Ref.: #69480]	halophile	no	63.13	no
[Ref.: #69480]	spore-forming	no	96.053	no
[Ref.: #69480]	glucose-util	yes	95.464	no
[Ref.: #69480]	aerobic	yes	94.057	no
[Ref.: #69480]	thermophile	no	94.934	yes
[Ref.: #69480]	glucose-ferment	no	86.965	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18890, CGMCC 1.10972

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fulvimarina manganoxydans sp. nov., isolated from a deep-sea hydrothermal plume in the south-west Indian Ocean.	Ren F, Zhang L, Song L, Xu S, Xi L, Huang L, Huang Y, Dai X	Int J Syst Evol Microbiol	10.1099/ijs.0.060558-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Fulvimarina manganoxydans strain CGMCC 1.10972

Fulvimarina manganoxydans strain CGMCC 1.10972

Change proposal

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