Halopenitus salinus (CGMCC 1.12229, JCM 18641)

Name: Halopenitus salinus (CGMCC 1.12229, JCM 18641)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162271

Type strain

Culture col. no. CGMCC 1.12229 JCM 18641

NCBI tax ID(s) 1198295

Special Collections JCM

History JCM <-- H.-L. Cui; Jiangsu Univ., China; SKJ47.

Links

Halopenitus salinus JCM 18641 is an archaeon that was isolated from Commercial preparation of the brown alga Laminaria produced at Dalian.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 393300

JCM 18641

@ref 20215

Last LPSN update 2026-05-29 08:44:53

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halopenitus

Species Halopenitus salinus

Full scientific name Halopenitus salinus Han et al. 2015

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.904

Spore formation

@ref	Spore formation	Confidence
125439		97.186

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Commercial preparation of the brown alga Laminaria produced at Dalian	Laminaria	Liaoning Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ937363 (>99% sequence identity) for Halopenitus salinus subclade from Microbeatlas

Aquatic Samples	34
Soil Samples	6
Animal Samples	3
Plant Samples	0
Total Samples	43

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266118v1 assembly for Halopenitus salinus CGMCC 1.12229	contig	GCA_042661185	1198295	74.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halopenitus salinus strain SKJ47 16S ribosomal RNA gene, partial sequence	JQ937363	1470		1198295

GC content

@ref	GC-content (mol%)	Method
67770	65	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266118v1 assembly for Halopenitus salinus CGMCC 1.12229
NCBI: GCA_042661185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.90	no
125439	gram_stain	BacteriaNetⓘ	negative	79.20	no
125439	motility	BacteriaNetⓘ	yes	47.85	no
125439	spore_formation	BacteriaNetⓘ	no	97.19	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopenitus salinus sp. nov., isolated from the brine of salted brown alga Laminaria.	Han D, Cui HL, Li ZR	Antonie Van Leeuwenhoek	10.1007/s10482-014-0244-y	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Halopenitus salinus (CGMCC 1.12229, JCM 18641)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042661185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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