Name: Marinomonas fungiae JCM 18476
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162251

Type strain:

Species: Marinomonas fungiae

Culture col. no.: JCM 18476, LMG 27065

Strain history: S. K. Das AN44.

NCBI tax ID(s): 1137284 (species)

Section

Marinomonas fungiae JCM 18476 is a mesophilic, Gram-negative bacterium that was isolated from Mucus of the coral Fungia echinata from Andaman Sea.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas fungiae**
	Full Scientific Name (LPSN)	Marinomonas fungiae Kumari et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #69480]	Motility	yes Confidence in %96.298

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Mucus of the coral Fungia echinata from Andaman Sea
[Ref.: #67770]	Host species	Fungia echinata
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ409370 (>99% sequence identity) for Marinomonas fungiae from Microbeatlas

Aquatic Samples	62
Soil Samples	10
Animal Samples	6
Plant Samples	1
Total Samples	79

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinomonas fungiae strain AN44 from India 16S ribosomal RNA gene, partial sequence	JQ409370	1411	ENA	1137284 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinomonas fungiae JCM 18476	GCA_001517305	scaffold	GenBank	1137284 tax ID
[Ref.: #67770]	Marinomonas fungiae JCM 18476	GCA_001418205	scaffold	GenBank	1137284 tax ID
[Ref.: #66792]	Marinomonas fungiae strain JCM 18476	1137284.4	wgs	PATRIC	1137284 tax ID	*
[Ref.: #66792]	Marinomonas fungiae JCM 18476	2617270736	draft	JGI IMG/M	1137284 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinomonas fungiae JCM 18476 NCBI: GCA_001418205.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinomonas fungiae strain JCM 18476 PATRIC: 1137284.4
[Ref.: #69480]	motile	yes	95.348	no
[Ref.: #69480]	flagellated	yes	96.01	no
[Ref.: #69480]	gram-positive	no	99.134	no
[Ref.: #69480]	anaerobic	no	97.568	no
[Ref.: #69480]	aerobic	yes	90.118	no
[Ref.: #69480]	halophile	yes	77.236	no
[Ref.: #69480]	spore-forming	no	94.631	no
[Ref.: #69480]	glucose-util	yes	86.488	no
[Ref.: #69480]	thermophile	no	99.685	no
[Ref.: #69480]	glucose-ferment	no	87.171	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18476, LMG 27065

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribrevibacterium harenarium gen. nov., sp. nov., represented by a marine strain of the family Oceanospirillaceae.	Mo K, Wu Q, Hu Y, Huang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004872	2021	*
Phylogeny	Marinomonas fungiae sp. nov., isolated from the coral Fungia echinata from the Andaman Sea.	Kumari P, Poddar A, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.054809-0	2013	*
Genetics	Draft Genome Sequence of Marinomonas fungiae Strain AN44(T) (JCM 18476(T)), Isolated from the Coral Fungia echinata from the Andaman Sea.	Kumari P, Badhai J, Das SK	Genome Announc	10.1128/genomeA.00112-18	2018	*
	Characterization of Three Novel SXT/R391 Integrating Conjugative Elements ICEMfuInd1a and ICEMfuInd1b, and ICEMprChn1 Identified in the Genomes of Marinomonas fungiae JCM 18476(T) and Marinomonas profundimaris Strain D104.	Badhai J, Das SK	Front Microbiol	10.3389/fmicb.2016.01896	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marinomonas fungiae JCM 18476

Marinomonas fungiae strain JCM 18476

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