Marinobacter nitratireducens (MTCC 11704, JCM 18428)

Name: Marinobacter nitratireducens (MTCC 11704, JCM 18428)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162244

Type strain

Culture col. no. MTCC 11704 JCM 18428

NCBI tax ID(s) 1137280

Special Collections JCM

History JCM <-- P. Anil Kumar AK21.

Links

Marinobacter nitratireducens JCM 18428 is a bacterium that was isolated from Coastal surface sea water from the shore at Rushikonda beach on the Bay of Bengal in Visakhapatnam.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133406

JCM 18428

@ref 20215

Last LPSN update 2026-05-29 08:44:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter nitratireducens

Full scientific name Marinobacter nitratireducens Vaidya et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.835
125438	negative	99
125438		90.624

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.527
125439		99.896

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Coastal surface sea water from the shore at Rushikonda beach on the Bay of Bengal in Visakhapatnam	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HE653973 (>99% sequence identity) for Marinobacter nitratireducens subclade from Microbeatlas

Aquatic Samples	626
Soil Samples	88
Animal Samples	26
Plant Samples	4
Total Samples	744

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Marinobacter sp. AK21 assembly for Marinobacter nitratireducens AK21	contig	GCA_000708045	1137280.3	2588253843	1137280	74.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Marinobacter nitratireducens partial 16S rRNA gene, type strain AK21T	HE653973	1479		1137280

GC content

@ref	GC-content (mol%)	Method
67770	54.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter sp. AK21 assembly for Marinobacter nitratireducens AK21
NCBI: GCA_000708045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	98.84	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.43	no
125439	motility	BacteriaNetⓘ	yes	79.70	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter nitratireducens AK21
NCBI: GCA_000708045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	96.43	no
125438	aerobic	aerobicⓘ	yes	78.00	no
125438	spore-forming	spore-formingⓘ	no	90.53	no
125438	thermophilic	thermophileⓘ	no	99.17	no
125438	flagellated	motile2+ⓘ	yes	90.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water.	Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AK	Int J Syst Evol Microbiol	10.1099/ijs.0.000218	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter nitratireducens (MTCC 11704, JCM 18428)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000708045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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