Name: Halorubrum rubrum JCM 18365
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162235

Type strain:

Species: Halorubrum rubrum

Culture col. no.: JCM 18365, CGMCC 1.12124

Strain history: H.-L. Cui; Jiangsu Univ., China; YC87.

NCBI tax ID(s): 1126240 (species)

Special Collections

Section

Halorubrum rubrum JCM 18365 is a mesophilic archaeon that was isolated from Yuncheng salt lake in Shanxi.

mesophilic
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloferacaceae*
	Genus	*Halorubrum*
	Species	**Halorubrum rubrum**
	Full Scientific Name (LPSN)	Halorubrum rubrum Qiu et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Yuncheng salt lake in Shanxi
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ237124 (>99% sequence identity) for Halorubrum rubrum from Microbeatlas

Aquatic Samples	5
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	6

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum rubrum strain YC87 16S ribosomal RNA gene, partial sequence	JQ237124	1470	GenBank ENA	1126240 tax ID
[Ref.: #124043]	Halorubrum rubrum gene for 16S ribosomal RNA, partial sequence, strain: JCM 18365.	AB935411	1471	GenBank ENA	1126240 tax ID	*

[Ref.: #67770]

GC-content

64.9 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18365, CGMCC 1.12124

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum rubrum sp. nov., an extremely halophilic archaeon from a Chinese salt lake.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-013-0002-6	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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