Name: Erythrobacter colymbi JCM 18338
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162231

Type strain:

Species: Erythrobacter colymbi

Culture col. no.: JCM 18338, KCTC 32078

Strain history: K. Furuhata TPW-24.

NCBI tax ID(s): 1161202 (species)

Section

Erythrobacter colymbi JCM 18338 is a mesophilic, Gram-negative bacterium that was isolated from Swimming pool water in Tokyo.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Erythrobacter*
	Species	**Erythrobacter colymbi**
	Full Scientific Name (LPSN)	Erythrobacter colymbi (Furuhata et al. 2013) Xu et al. 2020

Synonym

Porphyrobacter colymbi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.984

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Swimming pool water (free residual chlorine: 0.4 mg/L) in Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB702992 (>99% sequence identity) for Erythrobacter from Microbeatlas

Aquatic Samples	2635
Soil Samples	1335
Animal Samples	540
Plant Samples	296
Total Samples	4806

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Porphyrobacter colymbi gene for 16S rRNA, partial sequence	AB702992	1445	ENA	1161202 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Erythrobacter colymbi JCM 18338	GCA_002155685	scaffold	GenBank	1161202 tax ID
[Ref.: #66792]	Porphyrobacter colymbi strain JCM 18338	1161202.8	wgs	PATRIC	1161202 tax ID	*
[Ref.: #66792]	Erythrobacter colymbi JCM 18338	2845798653	draft	JGI IMG/M	1161202 tax ID	*

[Ref.: #67770]

GC-content

66.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Erythrobacter colymbi JCM 18338 NCBI: GCA_002155685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Porphyrobacter colymbi strain JCM 18338 PATRIC: 1161202.8
[Ref.: #69480]	motile	no	50.588	no
[Ref.: #69480]	gram-positive	no	97.294	no
[Ref.: #69480]	anaerobic	no	99.267	no
[Ref.: #69480]	aerobic	yes	94.226	no
[Ref.: #69480]	halophile	no	92.422	no
[Ref.: #69480]	spore-forming	no	93.931	no
[Ref.: #69480]	flagellated	no	87.645	no
[Ref.: #69480]	thermophile	no	94.76	yes
[Ref.: #69480]	glucose-util	yes	84.757	no
[Ref.: #69480]	glucose-ferment	no	92.139	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18338, KCTC 32078

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Erythrobacter colymbi JCM 18338

Porphyrobacter colymbi strain JCM 18338

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