Methylobacterium sp. (JCM 18006)

Name: Methylobacterium sp. (JCM 18006)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162163

Type strain

Culture col. no. JCM 18006

NCBI tax ID(s) 409

Special Collections JCM

Links

JCM 18006 is a mesophilic prokaryote that was isolated from Stem of soybean.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131238

JCM 18006

@ref 20215

Last LPSN update 2025-12-16 10:08:55

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylobacteriaceae

Genus Methylobacterium

Full scientific name Methylobacterium Patt et al. 1976 (Approved Lists 1980)

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Stem of soybean	Miyagi	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB600003 (>99% sequence identity) for Methylorubrum from Microbeatlas

Aquatic Samples	23711
Soil Samples	23280
Animal Samples	47578
Plant Samples	16159
Total Samples	110728

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM154281v1 assembly for Methylobacterium sp. AMS5	complete	GCA_001542815	2684623050	925818	98.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Methylobacterium sp. AMS5 gene for 16S rRNA, partial sequence	AB600003	1440		925818

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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