Name: Iodidimonas gelatinilytica JCM 17844
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162119

Type strain:

Species: Iodidimonas gelatinilytica

Culture col. no.: JCM 17844, LMG 28661

Strain history: S. Amachi Hi-2.

NCBI tax ID(s): 1236966 (species)

Other strains from Iodidimonas gelatinilytica

I. gelatinilytica JCM 17845, LMG 28662

Section

Iodidimonas gelatinilytica JCM 17844 is a mesophilic, Gram-negative bacterium that was isolated from Iodide-rich brine associated with natural gas in Chiba.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Iodidimonadales*
	Family	*Iodidimonadaceae*
	Genus	*Iodidimonas*
	Species	**Iodidimonas gelatinilytica**
	Full Scientific Name (LPSN)	Iodidimonas gelatinilytica Iino et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.958

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Iodide-rich brine associated with natural gas in Chiba
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB159206 (>99% sequence identity) for Iodidimonas from Microbeatlas

Aquatic Samples	357
Soil Samples	30
Animal Samples	37
Plant Samples	5
Total Samples	429

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Iodidimonas gelatinilytica gene for 16S rRNA, partial sequence	AB159206	1433	ENA	1236966 tax ID
[Ref.: #67770]	Kordiimonadales bacterium JCM 17844 Hi-2 DNA, sequence22, whole genome shotgun sequence	BKCL01000022	5282	ENA	1236966 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Iodidimonas gelatinilytica Hi-2	GCA_008579125	contig	GenBank	1236966 tax ID
[Ref.: #66792]	Kordiimonadales bacterium JCM 17844 strain Hi-2	1236966.3	wgs	PATRIC	1236966 tax ID	*

[Ref.: #67770]

GC-content

55.41 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kordiimonadales bacterium JCM 17844 strain Hi-2 PATRIC: 1236966.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordiimonadales bacterium JCM 17844 strain Hi-2 PATRIC: 1236966.3
[Ref.: #69480]	motile	yes	88.665	no
[Ref.: #69480]	gram-positive	no	98.409	no
[Ref.: #69480]	anaerobic	no	99.497	no
[Ref.: #69480]	aerobic	yes	85.811	no
[Ref.: #69480]	halophile	yes	83.378	no
[Ref.: #69480]	spore-forming	no	96.367	no
[Ref.: #69480]	thermophile	no	71.711	yes
[Ref.: #69480]	glucose-util	yes	77.362	no
[Ref.: #69480]	flagellated	no	65.674	no
[Ref.: #69480]	glucose-ferment	no	90.238	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17844, LMG 28661

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater.	Iino T, Oshima K, Hattori M, Ohkuma M, Amachi S	Antonie Van Leeuwenhoek	10.1007/s10482-021-01546-2	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Kordiimonadales bacterium JCM 17844 strain Hi-2

Kordiimonadales bacterium JCM 17844 strain Hi-2

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