Name: Siansivirga zeaxanthinifaciens JCM 17682
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162077

Type strain:

Species: Siansivirga zeaxanthinifaciens

Culture col. no.: JCM 17682, BCRC 80315

Strain history: C.-C. Young CC-SAMT-1.

NCBI tax ID(s): 762954 (species)

Section

Siansivirga zeaxanthinifaciens JCM 17682 is a mesophilic, Gram-negative bacterium that was isolated from Coastal seawater at China Sea.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Siansivirga*
	Species	**Siansivirga zeaxanthinifaciens**
	Full Scientific Name (LPSN)	Siansivirga zeaxanthinifaciens Hameed et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.947

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal seawater at China Sea
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM179539 (>99% sequence identity) for Siansivirga zeaxanthinifaciens subclade from Microbeatlas

Aquatic Samples	121
Soil Samples	1
Animal Samples	12
Plant Samples	1
Total Samples	135

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Siansivirga zeaxanthinifaciens strain CC-SAMT-1 16S ribosomal RNA gene, partial sequence	HM179539	1440	ENA	1454006 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Siansivirga zeaxanthinifaciens CC-SAMT-1	GCA_000941055	complete	GenBank	1454006 tax ID
[Ref.: #66792]	Siansivirga zeaxanthinifaciens CC-SAMT-1	1454006.9	complete	PATRIC	1454006 tax ID	*

[Ref.: #67770]

GC-content

33.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Siansivirga zeaxanthinifaciens CC-SAMT-1 PATRIC: 1454006.9
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Siansivirga zeaxanthinifaciens CC-SAMT-1 PATRIC: 1454006.9
[Ref.: #69480]	motile	no	91.174	no
[Ref.: #69480]	gram-positive	no	97.551	no
[Ref.: #69480]	anaerobic	no	99.504	no
[Ref.: #69480]	halophile	no	79.491	no
[Ref.: #69480]	spore-forming	no	97.156	no
[Ref.: #69480]	glucose-util	yes	85.885	no
[Ref.: #69480]	thermophile	no	98.974	yes
[Ref.: #69480]	aerobic	yes	84.779	no
[Ref.: #69480]	flagellated	no	95.12	no
[Ref.: #69480]	glucose-ferment	no	88.188	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17682, BCRC 80315

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Siansivirga jejuensis [corrected] sp. nov., isolated from seawater of Jeju Island in Korea and emendation of the genus Siansivirga.	Park JM, Han SK, Lee DG, Kang H, Trujillo ME, Lee DK	Antonie Van Leeuwenhoek	10.1007/s10482-014-0246-9	2014	*
Phylogeny	Siansivirga zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing member of the family Flavobacteriaceae isolated from coastal seawater of Taiwan.	Hameed A, Shahina M, Lin SY, Sridhar KR, Young LS, Lee MR, Chen WM, Chou JH, Young CC	FEMS Microbiol Lett	10.1111/j.1574-6968.2012.02596.x	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Siansivirga zeaxanthinifaciens CC-SAMT-1

Siansivirga zeaxanthinifaciens CC-SAMT-1

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