Name: Aurantimicrobium minutum JCM 16856
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161885

Type strain:

Species: Aurantimicrobium minutum

Culture col. no.: JCM 16856, NBRC 105389, NCIMB 14875

Strain history: T. Naganuma; Grad. Sch. of Biosphere Sci., Hiroshima Univ., Japan; KNC.

NCBI tax ID(s): 708131 (species)

Section

Aurantimicrobium minutum JCM 16856 is a psychrophilic bacterium that was isolated from 0.2 μm-filtrate of river water.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Aurantimicrobium*
	Species	**Aurantimicrobium minutum**
	Full Scientific Name (LPSN)	Aurantimicrobium minutum Nakai et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	20 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-11, MK-12, MK-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	0.2 μm-filtrate of river water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hiroshima
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB540017 (>99% sequence identity) for Aurantimicrobium minutum subclade from Microbeatlas

Aquatic Samples	23283
Soil Samples	2665
Animal Samples	6122
Plant Samples	952
Total Samples	33022

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aurantimicrobium minutum gene for 16S rRNA, partial sequence	AB540017	1473	ENA	708131 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aurantimicrobium minutum KNC	GCA_002355535	complete	GenBank	708131 tax ID

[Ref.: #67770]

GC-content

52.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16856, NBRC 105389, NCIMB 14875

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water.	Nakai R, Baba T, Niki H, Nishijima M, Naganuma T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000541	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aurantimicrobium minutum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF