Name: Halolamina pelagica JCM 16809
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161871

Type strain:

Species: Halolamina pelagica

Culture col. no.: JCM 16809, CGMCC 1.10329

Strain history: H.-L. Cui TBN21.

NCBI tax ID(s): 699431 (species)

Other strains from Halolamina pelagica

H. pelagica JCM 16810, CGMCC 1.10330

Section

Halolamina pelagica JCM 16809 is a mesophilic archaeon that was isolated from Taibei marine solar saltern near Lianyungang.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halolamina*
	Species	**Halolamina pelagica**
	Full Scientific Name (LPSN)	Halolamina pelagica Cui et al. 2011

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Taibei marine solar saltern near Lianyungang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GU208826 (>99% sequence identity) for Halolamina pelagica from Microbeatlas

Aquatic Samples	4
Soil Samples
Animal Samples
Plant Samples
Total Samples	4

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina pelagica strain TBN21 16S ribosomal RNA gene, complete sequence	GU208826	1472	ENA	699431 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina pelagica CGMCC 1.10329	GCA_900115675	contig	GenBank	699431 tax ID
[Ref.: #66792]	Halolamina pelagica CGMCC 1.10329	2663762745	draft	JGI IMG/M	699431 tax ID	*
[Ref.: #66792]	Halolamina pelagica strain CGMCC 1.10329	699431.5	wgs	PATRIC	699431 tax ID	*

[Ref.: #67770]

GC-content

64.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16809, CGMCC 1.10329

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina pelagica gen. nov., sp. nov., a new member of the family Halobacteriaceae.	Cui HL, Gao X, Yang X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.026799-0	2010	*
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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