Name: Hoeflea halophila JCM 16715
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161862

Type strain:

Species: Hoeflea halophila

Culture col. no.: JCM 16715, KCTC 23107

Strain history: S.-J. Park JG120-1.

NCBI tax ID(s): 714899 (species)

Section

Hoeflea halophila JCM 16715 is a mesophilic, Gram-negative bacterium that was isolated from Marine sediment.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Hoeflea*
	Species	**Hoeflea halophila**
	Full Scientific Name (LPSN)	Hoeflea halophila Jung et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.923

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GU564401 (>99% sequence identity) for Hoeflea from Microbeatlas

Aquatic Samples	2709
Soil Samples	1521
Animal Samples	840
Plant Samples	2593
Total Samples	7663

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hoeflea halophila strain JG120-1 16S ribosomal RNA gene, partial sequence	GU564401	1419	ENA	714899 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hoeflea halophila KCTC 23107	GCA_900220985	scaffold	GenBank	714899 tax ID	*
[Ref.: #66792]	Hoeflea halophila strain KCTC 23107	714899.3	wgs	PATRIC	714899 tax ID	*
[Ref.: #66792]	Hoeflea halophila KCTC 23107	2740891889	draft	JGI IMG/M	714899 tax ID	*

[Ref.: #67770]

GC-content

57.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hoeflea halophila KCTC 23107 NCBI: GCA_900220985.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hoeflea halophila KCTC 23107 NCBI: GCA_900220985.1
[Ref.: #69480]	flagellated	no	56.68	no
[Ref.: #69480]	gram-positive	no	97.922	no
[Ref.: #69480]	anaerobic	no	95.306	no
[Ref.: #69480]	aerobic	yes	88.947	no
[Ref.: #69480]	halophile	no	53.58	no
[Ref.: #69480]	spore-forming	no	96.817	no
[Ref.: #69480]	thermophile	no	97.163	yes
[Ref.: #69480]	glucose-util	yes	90.587	no
[Ref.: #69480]	motile	yes	90.791	no
[Ref.: #69480]	glucose-ferment	no	91.697	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16715, KCTC 23107

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hoeflea olei sp. nov., a diesel-oil-degrading, anoxygenic, phototrophic bacterium isolated from backwaters and emended description of the genus Hoeflea.	Rahul K, Azmatunnisa M, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.000277	2015	*
Phylogeny	Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea.	Jung MY, Shin KS, Kim S, Kim SJ, Park SJ, Kim JG, Cha IT, Kim MN, Rhee SK	Antonie Van Leeuwenhoek	10.1007/s10482-013-9876-6	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Hoeflea halophila KCTC 23107

Hoeflea halophila KCTC 23107

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