Name: Aliamphritea spongicola JCM 16668
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161855

Type strain:

Species: Aliamphritea spongicola

Culture col. no.: JCM 16668, KCCM 42943

Strain history: K. K. Kwon MEBiC05461.

NCBI tax ID(s): 707589 (species)

Section

Aliamphritea spongicola JCM 16668 is a mesophilic, Gram-negative bacterium that was isolated from Marine sponge inhabiting Micronesia.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Aliamphritea*
	Species	**Aliamphritea spongicola**
	Full Scientific Name (LPSN)	Aliamphritea spongicola (Jang et al. 2015) Yamano et al. 2023

Synonym

Amphritea spongicola

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %98.842

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.934
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sponge inhabiting Micronesia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GU289646 (>99% sequence identity) for Amphritea from Microbeatlas

Aquatic Samples	2558
Soil Samples	88
Animal Samples	486
Plant Samples	12
Total Samples	3144

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Amphritea spongicola strain MEBiC05461 16S ribosomal RNA gene, partial sequence	GU289646	1487	ENA	707589 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliamphritea spongicola JCM 16668	GCA_017051665	scaffold	GenBank	707589 tax ID	*
[Ref.: #66792]	Amphritea spongicola strain JCM 16668	707589.3	wgs	PATRIC	707589 tax ID	*
[Ref.: #66792]	Aliamphritea spongicola JCM 16668	GCA_024347235	complete	GenBank	707589 tax ID	*

[Ref.: #67770]

GC-content

48.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Amphritea spongicola JCM 16668 NCBI: GCA_017051665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amphritea spongicola JCM 16668 NCBI: GCA_024347235.1
[Ref.: #69480]	flagellated	yes	92.076	no
[Ref.: #69480]	gram-positive	no	99.054	no
[Ref.: #69480]	anaerobic	no	98.883	no
[Ref.: #69480]	aerobic	yes	82.079	no
[Ref.: #69480]	halophile	yes	77.146	no
[Ref.: #69480]	spore-forming	no	96.077	no
[Ref.: #69480]	motile	yes	92.673	no
[Ref.: #69480]	glucose-ferment	no	82.795	no
[Ref.: #69480]	thermophile	no	99.345	yes
[Ref.: #69480]	glucose-util	yes	63.645	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16668, KCCM 42943

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amphritea spongicola sp. nov., isolated from a marine sponge, and emended description of the genus Amphritea.	Jang H, Yang SH, Seo HS, Lee JH, Kim SJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.000188	2015	*
Phylogeny	Taxonomic revision of the genus Amphritea supported by genomic and in silico chemotaxonomic analyses, and the proposal of Aliamphritea gen. nov.	Yamano R, Yu J, Jiang C, Harjuno Condro Haditomo A, Mino S, Sakai Y, Sawabe T	PLoS One	10.1371/journal.pone.0271174	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Amphritea spongicola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Amphritea spongicola JCM 16668

Amphritea spongicola JCM 16668

Change proposal

Change proposal