Name: Polaribacter gangjinensis JCM 16152
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161734

Type strain:

Species: Polaribacter gangjinensis

Culture col. no.: JCM 16152, KCTC 22729

Strain history: J. S. Jung K17-16.

NCBI tax ID(s): 574710 (species)

Section

Polaribacter gangjinensis JCM 16152 is a mesophilic, Gram-negative bacterium that was isolated from Seawater of Gangjin Bay.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Polaribacter*
	Species	**Polaribacter gangjinensis**
	Full Scientific Name (LPSN)	Polaribacter gangjinensis Lee et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.973

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater of Gangjin Bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence FJ425213 (>99% sequence identity) for Polaribacter gangjinensis subclade from Microbeatlas

Aquatic Samples	3632
Soil Samples	171
Animal Samples	173
Plant Samples	15
Total Samples	3991

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Polaribacter gangjinensis strain K17-16 16S ribosomal RNA gene, partial sequence	FJ425213	1434	ENA	574710 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Polaribacter gangjinensis KCTC 22729	GCA_002954645	scaffold	GenBank	574710 tax ID
[Ref.: #66792]	Polaribacter gangjinensis JCM 16152	GCA_020532765	contig	GenBank	574710 tax ID	*
[Ref.: #66792]	Polaribacter gangjinensis strain KCTC 22729	574710.3	wgs	PATRIC	574710 tax ID	*
[Ref.: #66792]	Polaribacter gangjinensis KCTC 22729	2897653615	draft	JGI IMG/M	574710 tax ID	*

[Ref.: #67770]

GC-content

34.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Polaribacter gangjinensis KCTC 22729 NCBI: GCA_002954645.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polaribacter gangjinensis strain KCTC 22729 PATRIC: 574710.3
[Ref.: #69480]	gram-positive	no	98.138	no
[Ref.: #69480]	anaerobic	no	99.55	no
[Ref.: #69480]	halophile	no	82.45	no
[Ref.: #69480]	spore-forming	no	97.5	no
[Ref.: #69480]	glucose-util	yes	84.086	no
[Ref.: #69480]	thermophile	no	97.485	yes
[Ref.: #69480]	motile	no	92.821	no
[Ref.: #69480]	flagellated	no	96.695	no
[Ref.: #69480]	aerobic	yes	87.495	no
[Ref.: #69480]	glucose-ferment	no	89.146	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16152, KCTC 22729

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaribacter gangjinensis sp. nov., isolated from seawater.	Lee YS, Lee DH, Kahng HY, Sohn SH, Jung JS	Int J Syst Evol Microbiol	10.1099/ijs.0.024869-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Polaribacter gangjinensis KCTC 22729

Polaribacter gangjinensis strain KCTC 22729

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