Name: Syntrophomonas wolfei subsp. methylbutyratica JCM 14075
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161446

Type strain:

Species: Syntrophomonas wolfei subsp. methylbutyratica

Culture col. no.: JCM 14075, CGMCC 1.5051

Strain history: C. Wu and X. Dong 4J5.

NCBI tax ID(s): 378794 (subspecies)

Section

Syntrophomonas wolfei subsp. methylbutyratica JCM 14075 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Rice field mud in Jiangxi Province.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Syntrophomonas*
	Species	"Syntrophomonas wolfei subsp. methylbutyratica"
	Full Scientific Name (LPSN)	Syntrophomonas wolfei subsp. methylbutyratica Wu et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %98.648

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.438

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rice field mud in Jiangxi Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Syntrophomonas wolfei subsp. methybutyica strain 4J5 16S ribosomal RNA gene, partial sequence	DQ449033	1601	ENA	378794 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Syntrophomonas wolfei subsp. methylbutyratica JCM 14075	GCA_001570625	contig	GenBank	378794 tax ID	*
[Ref.: #66792]	Syntrophomonas wolfei subsp. methylbutyratica strain JCM 14075	378794.3	wgs	PATRIC	378794 tax ID	*
[Ref.: #66792]	Syntrophomonas wolfei methylbutyratica JCM 14075	2724679235	draft	JGI IMG/M	378794 tax ID	*

[Ref.: #67770]

GC-content

47.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Syntrophomonas wolfei subsp. methylbutyratica strain JCM 14075 PATRIC: 378794.3
[Ref.: #69481]	spore-forming	no	50	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Syntrophomonas wolfei subsp. methylbutyratica strain JCM 14075 PATRIC: 378794.3
[Ref.: #69480]	gram-positive	no	89.331	no
[Ref.: #69480]	anaerobic	yes	99.23	no
[Ref.: #69480]	halophile	no	90.41	no
[Ref.: #69480]	spore-forming	yes	74.186	no
[Ref.: #69480]	glucose-util	yes	60.021	no
[Ref.: #69480]	aerobic	no	98.523	no
[Ref.: #69480]	motile	yes	75.061	no
[Ref.: #69480]	thermophile	yes	54.788	yes
[Ref.: #69480]	flagellated	no	90.531	no
[Ref.: #69480]	glucose-ferment	no	82.191	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14075, CGMCC 1.5051

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Syntrophomonas wolfei subsp. methylbutyratica subsp. nov., and assignment of Syntrophomonas wolfei subsp. saponavida to Syntrophomonas saponavida sp. nov. comb. nov.	Wu C, Dong X, Liu X	Syst Appl Microbiol	10.1016/j.syapm.2006.12.001	2007	*
Genetics	Comparative Genomics of Syntrophic Branched-Chain Fatty Acid Degrading Bacteria.	Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Sekiguchi Y, Liu WT	Microbes Environ	10.1264/jsme2.ME16057	2016	*
Genetics	Draft Genome Sequence of Syntrophomonas wolfei subsp. methylbutyratica Strain 4J5T (JCM 14075), a Mesophilic Butyrate- and 2-Methylbutyrate-Degrading Syntroph.	Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Liu WT	Genome Announc	10.1128/genomeA.00047-16	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Syntrophomonas wolfei subsp. methylbutyratica strain JCM 14075

Syntrophomonas wolfei subsp. methylbutyratica strain JCM 14075

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