Name: Phocaeicola coprophilus JCM 13816
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161400

Type strain:

Species: Phocaeicola coprophilus

Culture col. no.: JCM 13816

Strain history: H. Hayashi CB40.

NCBI tax ID(s): 1342725 (strain), 387090 (species)

Other strains from Phocaeicola coprophilus

P. coprophilus CCUG 55424, CB 42, DSM 18228, JCM ... (type strain)
P. coprophilus JCM 13817

Section

Phocaeicola coprophilus JCM 13816 is an anaerobe, mesophilic bacterium that was isolated from Human feces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Phocaeicola*
	Species	**Phocaeicola coprophilus**
	Full Scientific Name (LPSN)	Phocaeicola coprophilus (Hayashi et al. 2007) García-López et al. 2020

Synonym

Bacteroides coprophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %94.528

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.453

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB064919 (>99% sequence identity) for Phocaeicola coprophilus subclade from Microbeatlas

Aquatic Samples	4526
Soil Samples	1337
Animal Samples	68517
Plant Samples	419
Total Samples	74799

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides coprophilus gene for 16S rRNA, partial sequence, strain: CB40 (= JCM 13816)	AB064919	1492	ENA	1342725 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phocaeicola coprophilus JCM 13816	GCA_001315745	contig	GenBank	1342725 tax ID	*
[Ref.: #66792]	Bacteroides coprophilus JCM 13816	1342725.3	wgs	PATRIC	1342725 tax ID	*
[Ref.: #66792]	Bacteroides coprophilus JCM 13816	2731957550	draft	JGI IMG/M	1342725 tax ID	*

[Ref.: #67770]

GC-content

44.2-45.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides coprophilus JCM 13816 PATRIC: 1342725.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides coprophilus JCM 13816 PATRIC: 1342725.3
[Ref.: #69480]	motile	no	92.406	no
[Ref.: #69480]	gram-positive	no	97.126	no
[Ref.: #69480]	anaerobic	yes	99.034	no
[Ref.: #69480]	halophile	no	86.267	no
[Ref.: #69480]	spore-forming	no	95.686	no
[Ref.: #69480]	thermophile	no	97.706	yes
[Ref.: #69480]	glucose-util	yes	84.677	no
[Ref.: #69480]	aerobic	no	98.313	no
[Ref.: #69480]	flagellated	no	96.235	no
[Ref.: #69480]	glucose-ferment	yes	69.682	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13816

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Bacteroides coprophilus JCM 13816

Bacteroides coprophilus JCM 13816

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