Name: Syntrophomonas erecta subsp. sporosyntropha JCM 13344
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161347

Type strain:

Species: Syntrophomonas erecta subsp. sporosyntropha

Culture col. no.: JCM 13344, CGMCC 1.5032

Strain history: X. Dong 5-3-Z.

NCBI tax ID(s): 370896 (subspecies)

Section

Syntrophomonas erecta subsp. sporosyntropha JCM 13344 is a mesophilic bacterium that was isolated from River sediment.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Syntrophomonas*
	Species	"Syntrophomonas erecta subsp. sporosyntropha"
	Full Scientific Name (LPSN)	Syntrophomonas erecta subsp. sporosyntropha Wu et al. 2006

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	River sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ086234 (>99% sequence identity) for Syntrophomonas erecta subclade from Microbeatlas

Aquatic Samples	99
Soil Samples	48
Animal Samples	55
Plant Samples	17
Total Samples	219

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Syntrophomonas erecta subsp. sporosyntropha strain 5-3-Z 16S ribosomal RNA gene, partial sequence	DQ086234	1531	ENA	370896 tax ID

[Ref.: #67770]

GC-content

40.6 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13344, CGMCC 1.5032

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Bicarbonate is a stimulus in the inter-species induced sporulation of strict anaerobic Syntrophomonas erecta subsp. sporosyntropha.	Wu C, Zhang G, Liu X, Dong X	Extremophiles	10.1007/s00792-007-0104-z	2007	*
Metabolism	Syntrophomonas erecta subsp. sporosyntropha subsp. nov., a spore-forming bacterium that degrades short chain fatty acids in co-culture with methanogens.	Wu C, Liu X, Dong X	Syst Appl Microbiol	10.1016/j.syapm.2006.01.003	2006	*
Phylogeny	Methanoculleus hydrogenitrophicus sp. nov., a methanogenic archaeon isolated from wetland soil.	Tian J, Wang Y, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.019273-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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