Name: Actinomadura oligospora JCM 10648
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161015

Type strain:

Species: Actinomadura oligospora

Culture col. no.: JCM 10648, ATCC 43269, BCRC 16818, NBRC 104149, NRRL 15878

Strain history: NRRL 15878 <-- F. P. Mertz and R. C. Yao A80190.1.

NCBI tax ID(s): 1399798 (strain), 111804 (species)

SI-ID 41745

ATCC 43269, NRRL 15878, JCM 10648, DSM 43930, BCRC 16818, CCRC 16818, NBRC 104149

Other strains from Actinomadura oligospora

A. oligospora DSM 43928, NRRL B-16216

Section

Actinomadura oligospora JCM 10648 is a spore-forming, mesophilic bacterium that was isolated from Soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura oligospora**
	Full Scientific Name (LPSN)	Actinomadura oligospora Mertz and Yao 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.539

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Name of produced compound

Polyene antibiotic A80190 (US Pat. 4,683,201)

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF163118 (>99% sequence identity) for Actinomadura from Microbeatlas

Aquatic Samples	9
Soil Samples	72
Animal Samples	11
Plant Samples	7
Total Samples	99

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura oligospora 16S ribosomal RNA gene, partial sequence	AF163118	1462	ENA	111804 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura oligospora ATCC 43269	GCA_000518265	scaffold	GenBank	1399798 tax ID
[Ref.: #66792]	Actinomadura oligospora ATCC 43269	1399798.3	wgs	PATRIC	1399798 tax ID	*
[Ref.: #66792]	Actinomadura oligospora ATCC 43269	2540341222	draft	JGI IMG/M	1399798 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomadura oligospora ATCC 43269 ATCC 43269 NCBI: GCA_000518265.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomadura oligospora ATCC 43269 PATRIC: 1399798.3
[Ref.: #69480]	motile	no	93.193	no
[Ref.: #69480]	gram-positive	yes	91.803	no
[Ref.: #69480]	anaerobic	no	99.119	no
[Ref.: #69480]	halophile	no	93.902	no
[Ref.: #69480]	spore-forming	yes	95.781	no
[Ref.: #69480]	thermophile	no	96.79	yes
[Ref.: #69480]	glucose-util	yes	90.505	no
[Ref.: #69480]	aerobic	yes	92.743	no
[Ref.: #69480]	flagellated	no	97.961	no
[Ref.: #69480]	glucose-ferment	no	91.943	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10648, ATCC 43269, BCRC 16818, NBRC 104149, NRRL 15878

[Ref.: #113148]

SI-ID 41745

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.	Hu J, Han C, Yu B, Zhao J, Guo X, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003819	2020	*
Phylogeny	Actinomadura logoneensis sp. nov., a novel actinomycete isolated from the soil.	Shi L, Han L, Guo X, Zhao J, Wang J, Wang H, Jiang S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003579	2019	*
Phylogeny	Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.	Malisorn K, Kanchanasin P, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002940	2018	*
Phylogeny	Actinomadura gamaensis sp. nov., a novel actinomycete isolated from soil in Gama, Chad.	Abagana AY, Sun P, Liu C, Cao T, Zheng W, Zhao S, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-016-0683-8	2016	*
Phylogeny	Actinomadura rupiterrae sp. nov., isolated from cliff soil.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.035121-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113148

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41745.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinomadura oligospora in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Actinomadura oligospora ATCC 43269 ATCC 43269

Actinomadura oligospora ATCC 43269

Change proposal

Change proposal