Actinomadura oligospora (NRRL 15878, NBRC 104149, BCRC 16818)

Name: Actinomadura oligospora (NRRL 15878, NBRC 104149, BCRC 16818)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161015

Type strain

Culture col. no. NRRL 15878 NBRC 104149 BCRC 16818 ATCC 43269 JCM 10648

NCBI tax ID(s) 1399798 111804

Special Collections DSMZ JCM

History NRRL 15878 <-- F. P. Mertz and R. C. Yao A80190.1.

Links

Actinomadura oligospora JCM 10648 is a bacterium that was isolated from Soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41745

ATCC 43269,NRRL 15878,JCM 10648,DSM 43930,BCRC 16818,CCRC 16818,NBRC 104149

@ref 20215

Last LPSN update 2026-02-09 11:39:02

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura oligospora

Full scientific name Actinomadura oligospora Mertz and Yao 1986

BacDive ID	Other strains from **Actinomadura oligospora** (1)	Type strain
16973	A. oligospora DSM 43928, NRRL B-16216

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.8
125439		91.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.251
125439	obligate aerobe	98.1

Spore formation

@ref	Spore formation	Confidence
125438		90.141
125439		96.9

Compound production

67770

CompoundPolyene antibiotic A80190 (US Pat. 4,683,201)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF163118 (>99% sequence identity) for Actinomadura from Microbeatlas

Aquatic Samples	9
Soil Samples	72
Animal Samples	11
Plant Samples	7
Total Samples	99

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM51826v1 assembly for Actinomadura oligospora ATCC 43269	scaffold	GCA_000518265	1399798.3	2540341222	1399798	69.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Actinomadura oligospora 16S ribosomal RNA gene, partial sequence	AF163118	1462		111804

GC content

@ref	GC-content (mol%)	Method
67770	72	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomadura oligospora ATCC 43269
NCBI: GCA_000518265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.90	no
125439	motility	BacteriaNetⓘ	no	91.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomadura oligospora ATCC 43269
PATRIC: 1399798.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.51	no
125438	anaerobic	anaerobicⓘ	no	95.30	no
125438	spore-forming	spore-formingⓘ	yes	90.14	no
125438	aerobic	aerobicⓘ	yes	90.25	no
125438	thermophilic	thermophileⓘ	no	94.33	yes
125438	flagellated	motile2+ⓘ	no	88.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Unique post-translational oxime formation in the biosynthesis of the azolemycin complex of novel ribosomal peptides from Streptomyces sp. FXJ1.264.	Liu N, Song L, Liu M, Shang F, Anderson Z, Fox DJ, Challis GL, Huang Y.	Chem Sci	10.1039/c5sc03021h	2016
Genetics	Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery.	Rudolf JD, Yan X, Shen B.	J Ind Microbiol Biotechnol	10.1007/s10295-015-1671-0	2016
Phylogeny	Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.	Hu J, Han C, Yu B, Zhao J, Guo X, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003819	2020
Phylogeny	Actinomadura logoneensis sp. nov., a novel actinomycete isolated from the soil.	Shi L, Han L, Guo X, Zhao J, Wang J, Wang H, Jiang S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003579	2019
Phylogeny	Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.	Malisorn K, Kanchanasin P, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002940	2018
Phylogeny	Actinomadura gamaensis sp. nov., a novel actinomycete isolated from soil in Gama, Chad.	Abagana AY, Sun P, Liu C, Cao T, Zheng W, Zhao S, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-016-0683-8	2016
Phylogeny	Actinomadura rupiterrae sp. nov., isolated from cliff soil.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.035121-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura oligospora (NRRL 15878, NBRC 104149, BCRC 16818)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000518265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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