Name: Hydrogenobacter subterraneus JCM 10560
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160993

Type strain:

Species: Hydrogenobacter subterraneus

Culture col. no.: JCM 10560, IFO 16485, NBRC 16485

Strain history: K. Takai HGP1.

NCBI tax ID(s): 92642 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Hydrogenobacter subterraneus JCM 10560 is a thermophilic bacterium that was isolated from Water sample from a deep subsurface geothermal water pool at a depth of 1,500 m in the Hacchoubaru geothermal plant.

thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Aquificaceae*
	Genus	*Hydrogenobacter*
	Species	"Hydrogenobacter subterraneus"
	Full Scientific Name (LPSN)	Hydrogenobacter subterraneus Takai et al. 2001

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	75 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Water sample from a deep subsurface geothermal water pool at a depth of 1,500 m in the Hacchoubaru geothermal plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	Oita
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB026268 (>99% sequence identity) for Hydrogenobacter from Microbeatlas

Aquatic Samples	181
Soil Samples	2
Animal Samples	15
Plant Samples	5
Total Samples	203

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hydrogenobacter subterranea gene for 16S ribosomal RNA, partial sequence	AB026268	1497	GenBank ENA	92642 tax ID
[Ref.: #124043]	Hydrogenobacter subterraneus 16S-23S rRNA intergenic spacer containing tRNA-Ile and tRNA-Ala genes, type strain IFO 16485T	AM259528	322	GenBank ENA	92642 tax ID	*

[Ref.: #67770]

GC-content

44.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10560, IFO 16485, NBRC 16485

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenobacter subterraneus sp. nov., an extremely thermophilic, heterotrophic bacterium unable to grow on hydrogen gas, from deep subsurface geothermal water.	Takai K, Komatsu T, Horikoshi K	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1425	2001	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Hydrogenobacter subterraneus in external resources:
SILVA
BRENDA
PANGAEA
GBIF